BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0545400 Os08g0545400|Os08g0545400
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0545400 Similar to CRT/DRE binding factor (Transcripti... 295 2e-80
Os06g0165600 CRT/DRE binding factor (Transcription factor R... 137 5e-33
Os09g0522200 DRE-binding protein 1A 117 7e-27
Os08g0545500 Similar to DRE-binding protein 1A 115 2e-26
Os09g0522100 Similar to C-repeat binding factor 3-like protein 113 1e-25
Os09g0522000 Similar to CBF-like protein 107 5e-24
Os04g0572400 Similar to CRT/DRE binding factor 1 79 2e-15
Os06g0127100 Similar to CBF-like protein 79 4e-15
Os02g0677300 Similar to CRT/DRE binding factor 1 77 1e-14
Os01g0968800 Similar to Dehydration responsive element bind... 65 4e-11
>Os08g0545400 Similar to CRT/DRE binding factor (Transcription factor RCBF4)
Length = 236
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/236 (67%), Positives = 160/236 (67%)
Query: 1 MEKNTTAMGQLMXXXXXXXXXXXGPASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCE 60
MEKNTTAMGQLM GPASPKRPAGRTKFQETRHPVF WVCE
Sbjct: 1 MEKNTTAMGQLMSSSATTAATATGPASPKRPAGRTKFQETRHPVFRGVRRRGRAGRWVCE 60
Query: 61 VRVPGSRGDRLWVGTFDTXXXXXXXXXXXXXXXCGASASLNFADSAWLLHVPRAPVASGH 120
VRVPGSRGDRLWVGTFDT CGASASLNFADSAWLLHVPRAPVASGH
Sbjct: 61 VRVPGSRGDRLWVGTFDTAEEAARAHDAAMLALCGASASLNFADSAWLLHVPRAPVASGH 120
Query: 121 DQLPDVQRAASEAVAEFQRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXNDDNXXXXXXXX 180
DQLPDVQRAASEAVAEFQRRG NDDN
Sbjct: 121 DQLPDVQRAASEAVAEFQRRGSTAATATATSGDAASTAPPSSSPVLSPNDDNASSASTPA 180
Query: 181 XXXXLDHGDMFGGMRTDLYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
LDHGDMFGGMRTDLYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS
Sbjct: 181 VAAALDHGDMFGGMRTDLYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
>Os06g0165600 CRT/DRE binding factor (Transcription factor RCBF4)
Length = 253
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Query: 1 MEKNTTAMGQLMXXXXXXXXXXXGPASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCE 60
MEKNT A GQLM P+SPKRPAGRTKFQETRH VF WVC+
Sbjct: 1 MEKNTAASGQLMTSSAEAT-----PSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCK 55
Query: 61 VRVPGSRGDRLWVGTFDTXXXXXXXXXXXXXXXCGASASLNFADSAWLLHVPRAPVASGH 120
VRVPGSRGDR W+GT DT CGASASLNFADSAWLLHVPRAPV SG
Sbjct: 56 VRVPGSRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGL 115
Query: 121 DQLPDVQRAASEAVAEFQR 139
P R A+ + +R
Sbjct: 116 R--PPAARCATRCLQGHRR 132
>Os09g0522200 DRE-binding protein 1A
Length = 238
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 99/219 (45%), Gaps = 21/219 (9%)
Query: 26 ASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXX 85
A PKRPAGRTKF+ETRHPVF WVCEVRVPG RG RLW+GTFDT
Sbjct: 32 APPKRPAGRTKFRETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARA 91
Query: 86 XXXXXXXXCG------ASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQR 139
+ LNFADSAWLL VPR+ + L DV+ A +EAV +F R
Sbjct: 92 HDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRS-----YRTLADVRHAVAEAVEDFFR 146
Query: 140 R--GXXXXXXXXXXXXXXXXXXXXXXXXXXXNDDNXXXXXXXXXXXXLDHGDMFGGMRTD 197
R D + L D+ M D
Sbjct: 147 RRLADDALSATSSSSTTPSTPRTDDDEESAATDGDESSSPASDLAFEL---DVLSDMGWD 203
Query: 198 LYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
LY+ASLAQG+L+EPP + DD A++ LWS
Sbjct: 204 LYYASLAQGMLMEPP-----SAALGDDGDAILADVPLWS 237
>Os08g0545500 Similar to DRE-binding protein 1A
Length = 251
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 24 GPASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXX 83
P S KRPAGRTKF ETRHPVF WVCEVRVPG RG RLW+GTFD
Sbjct: 34 SPPSSKRPAGRTKFHETRHPVFRGVRRRGRAGRWVCEVRVPGRRGCRLWLGTFDAADAAA 93
Query: 84 XXXXXXXXXXCG-ASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGX 142
G A+A LNFADSAWLL VP P A+ DVQRA + A+ +F++R
Sbjct: 94 RAHDAAMLALRGRAAACLNFADSAWLLAVP--PPATLRCAA-DVQRAVARALEDFEQRES 150
Query: 143 XXXXXXXXXXXXXXXXXXXXXXXXXXNDDNXXXXXXXXXXXXLDHG----DMFGGMRTDL 198
+DD+ + D+ M L
Sbjct: 151 SSSVFPLAIDVVAEDAMSATSEPSAASDDDAVTSSSSTTDADEEASPFELDVVSDMGWSL 210
Query: 199 YFASLAQGLLIEPP 212
Y+ASLA+GLL+EPP
Sbjct: 211 YYASLAEGLLMEPP 224
>Os09g0522100 Similar to C-repeat binding factor 3-like protein
Length = 246
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 29 KRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXXXXX 88
KRPAGRTKF+ETRHPV+ WVCEVRVPG RG RLW+GT+ T
Sbjct: 31 KRPAGRTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDA 90
Query: 89 XXXX-----XCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGXX 143
G +A LNF DSAWLL VP A L V+RAA+EAVA F +R
Sbjct: 91 AMIALRGGAGGGGAACLNFQDSAWLLAVPPA----APSDLAGVRRAATEAVAGFLQRNKT 146
Query: 144 XXXXXXXXXXXXXXXXXXXXXXXXXND--------DNXXXXXXXXXXXXLD--HGDMFGG 193
N + LD D FG
Sbjct: 147 TNGASVAEAMDEATSGVSAPPPLANNAGSSETPGPSSIDGTADTAAGAALDMFELDFFGE 206
Query: 194 MRTDLYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
M D Y+ASLA+GLL+EPPP T D G GA++ LWS
Sbjct: 207 MDYDTYYASLAEGLLMEPPPAATA----LWDNGDEGADIALWS 245
>Os09g0522000 Similar to CBF-like protein
Length = 218
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 28 PKRPAGRTKFQETRHPVFXXXXXXXXXXX----WVCEVRVPGSRGDRLWVGTFDTXXXXX 83
PKRPAGRTKF+ETRHPV+ WVCEVRVPG+RG RLW+GTF T
Sbjct: 16 PKRPAGRTKFRETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAA 75
Query: 84 XXXXXXXXXXCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGXX 143
G +A LNFADSAW +P P ++ V+ A + AV FQR+
Sbjct: 76 RAHDAAALALRGRAACLNFADSAW--RMPPVPASAALAGARGVRDAVAVAVEAFQRQS-- 131
Query: 144 XXXXXXXXXXXXXXXXXXXXXXXXXNDDNXXXXXXXXXXX------XLDHGDMFGGMRTD 197
+DN LD G FGGM
Sbjct: 132 ---------AAPSSPAETFANDGDEEEDNKDVLPVAAAEVFDAGAFELDDGFRFGGMDAG 182
Query: 198 LYFASLAQGLLIEPPPPPTTAEGFCDDEGCGGAEMELWS 236
Y+ASLAQGLL+EPP A + +D G++M LWS
Sbjct: 183 SYYASLAQGLLVEPP----AAGAWWEDGELAGSDMPLWS 217
>Os04g0572400 Similar to CRT/DRE binding factor 1
Length = 219
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 26 ASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXX 85
A PKR AGRTKF+ETRHPV+ WVCEVR P + R+W+GTF+T
Sbjct: 34 APPKRRAGRTKFKETRHPVY-KGVRSRNPGRWVCEVREPHGK-QRIWLGTFETAEMAARA 91
Query: 86 XXXXXXXXCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQ 138
G +A LNFADS L VP P+ +GH++ ++RAA EA F+
Sbjct: 92 HDVAAMALRGRAACLNFADSPRRLRVP--PLGAGHEE---IRRAAVEAAELFR 139
>Os06g0127100 Similar to CBF-like protein
Length = 214
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 26 ASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXX 85
A PKRPAGRTKF+ETRHPV+ WVCEVR P + R+W+GTF T
Sbjct: 15 APPKRPAGRTKFRETRHPVYRGVRRRGPAGRWVCEVREPNKKS-RIWLGTFATAEAAARA 73
Query: 86 XXXXXXXXCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASE 132
G A LNFADSA LL V A +A+ D++RAA E
Sbjct: 74 HDVAALALRGRGACLNFADSARLLRVDPATLATPD----DIRRAAIE 116
>Os02g0677300 Similar to CRT/DRE binding factor 1
Length = 224
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 26 ASPKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXX 85
A PKR AGRTKF+ETRHPVF WVCEVR P + R+W+GTF+T
Sbjct: 36 APPKRRAGRTKFKETRHPVF-KGVRRRNPGRWVCEVREPHGK-QRIWLGTFETAEMAARA 93
Query: 86 XXXXXXXXCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGXXXX 145
G +A LNFADS L VP P+ + HD D++RAA+EA F+
Sbjct: 94 HDVAALALRGRAACLNFADSPRRLRVP--PIGASHD---DIRRAAAEAAEAFR------- 141
Query: 146 XXXXXXXXXXXXXXXXXXXXXXXNDDNXXXXXXXXXXXXLDHGDMFGGMRTDLYFASLAQ 205
+ N +D G + GM+ + +AQ
Sbjct: 142 ----PPPDESNAATEVAAAASGATNSNAEQFASHPYYEVMDDG-LDLGMQG---YLDMAQ 193
Query: 206 GLLIEPPP---PPTTAEGFCDDEGCGGAEMELWS 236
G+LI+PPP P G D++G E++LWS
Sbjct: 194 GMLIDPPPMAGDPAVGSGEDDNDG----EVQLWS 223
>Os01g0968800 Similar to Dehydration responsive element binding protein 1F
(DREB1F protein)
Length = 219
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 28 PKRPAGRTKFQETRHPVFXXXXXXXXXXXWVCEVRVPGSRGDRLWVGTFDTXXXXXXXXX 87
PKR AGR KF+ETRHPV+ WVCEVR P ++ R+W+GT+ T
Sbjct: 30 PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQA-RIWLGTYPTPEMAARAHD 88
Query: 88 XXXXXXCGAS-ASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRR 140
G A LNF DS L PRA AS P+ R A+ AE RR
Sbjct: 89 VAAIALRGERGAELNFPDSPSTL--PRARTAS-----PEDIRLAAAQAAELYRR 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,124,702
Number of extensions: 248494
Number of successful extensions: 1477
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1462
Number of HSP's successfully gapped: 10
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)