Os06g0165600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CRT/DRE binding factor (Transcription factor RCBF4).
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Os06g0165600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CRT/DRE binding factor (Transcription factor RCBF4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.86 | 0.701 | 10.3 | 0.282 | 3.08 | -2.45 | 0.951 | -1.62 | -0.751 | 10.4 | 21.5 | 2073 | -- | -- |
| 226.79 | 0.701 | 10.3 | 0.71 | 3.07 | -2.3 | 0.994 | -- | -0.622 | 10.4 | 21.75 | 2127 | -- | -- |
| 225.98 | 0.7 | 10.3 | 0.276 | 3.07 | -2.41 | -- | -1.69 | -0.751 | 10.4 | 21.63 | 2101 | -- | -- |
| 231.61 | 0.709 | 10.3 | 0.737 | 3.07 | -2.3 | -- | -- | -0.629 | 10.4 | 21.8 | 2115 | -- | -- |
| 689.64 | 1.22 | 10.4 | 0.57 | -- | -2.88 | -- | -0.773 | -0.535 | -- | 21.86 | 834 | -- | -- |
| 389.53 | 0.925 | 10.4 | -0.368 | 3.25 | -- | 1.11 | -- | -1.36 | 10.4 | -- | -- | -- | -- |
| 394.48 | 0.93 | 10.4 | -0.324 | 3.24 | -- | -- | -- | -1.36 | 10.4 | -- | -- | -- | -- |
| 695.69 | 1.23 | 10.3 | 0.676 | -- | -2.89 | -- | -- | -0.466 | -- | 21.8 | 833 | -- | -- |
| 230.87 | 0.708 | 10.3 | -- | 2.89 | -1.89 | -- | -- | -0.779 | 10.3 | 22.26 | 904 | -- | -- |
| 1037 | 1.5 | 10.5 | -0.377 | -- | -- | -- | -- | -1.37 | -- | -- | -- | -- | -- |
| 397.24 | 0.932 | 10.4 | -- | 3.24 | -- | -- | -- | -1.32 | 10.4 | -- | -- | -- | -- |
| 705.02 | 1.24 | 10.3 | -- | -- | -2.72 | -- | -- | -0.572 | -- | 21.94 | 844 | -- | -- |
| 1040.75 | 1.51 | 10.5 | -- | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 239.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 17 | 241.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 22 | 241.29 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 57 | 243.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 58 | 243.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 60 | 243.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 70 | 243.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 91 | 243.82 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 102 | 244.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 103 | 244.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 109 | 244.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 118 | 244.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 137 | 244.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 161 | 245.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 171 | 245.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 172 | 245.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 399 | 248.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 426 | 249.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 634 | 253.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 658 | 253.74 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 717 | 254.92 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 754 | 255.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 763 | 255.93 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 775 | 256.23 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 794 | 256.51 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 806 | 256.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 842 | 257.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 860 | 257.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 884 | 257.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 919 | 258.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 941 | 258.42 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 965 | 258.68 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 976 | 258.81 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 982 | 258.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 12 |