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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0545500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DRE-binding protein 1A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.5 (0.0473) R2 : 0.875
β1 : -3.64 (0.174) R2dD : 0.127 R2D : 0.0871
β2 : 0.722 (0.128) R2dC : 0.0112 R2C : -0.0926
β3 : 6.6 (0.142) R2dE : 0.776 R2E : 0.687
β4 : 4.48 (0.427) R2dD*C : 0.0298 R2D*C : 0.000672
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.28 (0.101) R2dN8 : 0.06 R2N8 : 0.0258
σ : 0.882
deviance : 358.91
__
_____
C
peak time of C : 12.2
E
wheather : radiation
threshold : 1.32
memory length : 554
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
355.21 0.886 6.54 -3.78 1.21 7.33 8.13 5.42 -1.33 14.4 1.265 555 -- --
358.91 0.882 6.5 -3.64 0.722 6.6 4.48 -- -1.28 12.2 1.32 554 -- --
441.93 0.987 6.47 -3.89 5.96 0.265 -- -3.2 -1.55 4.94 1.265 555 -- --
441.33 0.978 6.47 -3.47 0.719 5.81 -- -- -1.29 7.61 0.8266 559 -- --
444.52 0.982 6.46 -3.21 -- 6.47 -- -4.91 -1.09 -- 1.44 585 -- --
499.24 1.05 6.49 -3.96 6.02 -- -1.82 -- -1.58 4.69 -- -- -- --
507.5 1.05 6.48 -3.95 6.01 -- -- -- -1.57 4.74 -- -- -- --
446.3 0.984 6.5 -3.47 -- 6.5 -- -- -1.26 -- 1.24 595 -- --
746.2 1.27 6.4 -- 0.639 5.97 -- -- -0.937 7.94 0.02892 559 -- --
2423.03 2.3 6.54 -3.72 -- -- -- -- -1.41 -- -- -- -- --
917.7 1.42 6.38 -- 5.94 -- -- -- -1.13 4.76 -- -- -- --
743.63 1.27 6.42 -- -- 6.6 -- -- -0.905 -- 0.009902 595 -- --
2787.71 2.46 6.44 -- -- -- -- -- -1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 345.04 temperature 25 90 < th dose independent rect. 16 13
12 356.62 temperature 25 270 < th dose independent sin 14 NA
18 359.15 temperature 30 90 < th dose dependent rect. 16 13
30 362.70 temperature 25 720 < th dose independent rect. 16 3
33 363.71 radiation 1 720 < th dose independent rect. 23 19
34 363.77 temperature 25 720 < th dose independent rect. 17 1
60 369.19 radiation 1 720 > th dose independent rect. 11 19
62 369.21 temperature 30 90 < th dose dependent rect. 16 15
74 371.12 radiation 1 720 < th dose dependent rect. 23 19
75 371.12 radiation 1 720 < th dose dependent rect. 21 21
100 373.25 radiation 1 720 > th dose independent rect. 11 7
102 373.72 radiation 1 720 < th dose dependent rect. 6 22
107 374.06 radiation 1 720 < th dose independent rect. 15 11
111 374.37 radiation 1 720 < th dose dependent rect. 15 11
116 374.70 temperature 30 720 < th dose dependent rect. 17 1
127 375.45 radiation 1 720 < th dose independent rect. 6 22
160 377.08 radiation 1 720 < th dose dependent rect. 15 13
166 377.41 radiation 1 720 < th dose dependent rect. 17 1
185 378.05 radiation 1 720 < th dose independent rect. 7 19
205 378.80 radiation 1 720 < th dose independent rect. 17 1
207 379.02 temperature 15 270 > th dose dependent rect. 17 8
212 379.23 temperature 30 90 < th dose dependent rect. 16 19
234 379.94 radiation 1 720 > th dose independent sin 22 NA
259 381.15 radiation 1 720 < th dose independent rect. 1 17
262 381.30 temperature 30 270 < th dose dependent rect. 15 7
267 381.61 temperature 30 90 < th dose dependent sin 15 NA
298 382.35 temperature 30 10 < th dose dependent sin 14 NA
305 382.46 radiation 1 720 < th dose dependent rect. 16 3
354 384.66 radiation 1 720 > th dose independent rect. 13 17
367 385.09 radiation 1 720 > th dose independent rect. 17 23
387 385.69 radiation 1 720 < th dose dependent sin 15 NA
403 386.07 radiation 1 720 < th dose independent sin 15 NA
414 386.53 radiation 1 720 > th dose independent rect. 4 14
427 386.71 radiation 1 720 < th dose dependent rect. 15 5
443 387.12 temperature 30 10 < th dose dependent rect. 16 8
451 387.64 radiation 1 720 < th dose dependent rect. 1 17
459 387.88 radiation 1 720 < th dose dependent rect. 3 23
473 388.37 radiation 1 720 < th dose dependent rect. 14 21
475 388.40 radiation 1 720 > th dose independent no NA NA
525 388.63 wind 3 720 > th dose independent rect. 8 10
547 388.88 radiation 1 720 < th dose independent rect. 14 21
604 389.73 radiation 1 720 < th dose dependent no NA NA
605 389.77 radiation 1 720 < th dose independent no NA NA
617 389.98 radiation 1 720 > th dose independent rect. 15 23
692 391.40 radiation 1 720 < th dose independent rect. 3 23
705 391.62 radiation 1 720 > th dose independent rect. 13 5
719 391.87 temperature 25 720 < th dose independent rect. 10 13
727 391.99 temperature 10 270 > th dose dependent rect. 9 14
764 392.72 wind 3 720 < th dose independent rect. 2 15
800 393.09 wind 9 720 < th dose dependent rect. 2 15
803 393.13 radiation 1 720 < th dose dependent rect. 7 13
826 393.60 temperature 30 720 < th dose independent rect. 8 10
830 393.64 wind 1 720 > th dose dependent rect. 8 11
833 393.71 radiation 1 720 < th dose dependent rect. 3 15
874 394.47 temperature 30 720 < th dose independent rect. 6 14
883 394.55 radiation 20 720 < th dose dependent rect. 16 10
902 394.83 wind 9 270 < th dose dependent rect. 22 17
937 395.05 radiation 1 720 < th dose independent rect. 7 13
961 395.39 temperature 30 720 < th dose dependent rect. 11 9
992 395.98 temperature 30 720 < th dose independent rect. 7 21