BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0545500 Os08g0545500|Os08g0545500
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0545500 Similar to DRE-binding protein 1A 322 1e-88
Os09g0522200 DRE-binding protein 1A 148 4e-36
Os09g0522100 Similar to C-repeat binding factor 3-like protein 121 4e-28
Os08g0545400 Similar to CRT/DRE binding factor (Transcripti... 105 2e-23
Os09g0522000 Similar to CBF-like protein 97 2e-20
Os09g0305900 86 3e-17
Os06g0165600 CRT/DRE binding factor (Transcription factor R... 79 4e-15
Os06g0127100 Similar to CBF-like protein 75 4e-14
>Os08g0545500 Similar to DRE-binding protein 1A
Length = 251
Score = 322 bits (826), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/251 (68%), Positives = 171/251 (68%)
Query: 1 MCTSKLEEITGEWPPPALQAASTTSSSEPCRRLSPPSSKRPAGRTKFHETRHPVFXXXXX 60
MCTSKLEEITGEWPPPALQAASTTSSSEPCRRLSPPSSKRPAGRTKFHETRHPVF
Sbjct: 1 MCTSKLEEITGEWPPPALQAASTTSSSEPCRRLSPPSSKRPAGRTKFHETRHPVFRGVRR 60
Query: 61 XXXXXXWVCEVRVPGRRGCRLWLGTFXXXXXXXXXXXXXXXXXXXXXXXCLNFADSAWLL 120
WVCEVRVPGRRGCRLWLGTF CLNFADSAWLL
Sbjct: 61 RGRAGRWVCEVRVPGRRGCRLWLGTFDAADAAARAHDAAMLALRGRAAACLNFADSAWLL 120
Query: 121 AVPPPATLRCAADVQRAVARALEDFEQRESSSSVFPLAIDVVAEDAMSATSEPXXXXXXX 180
AVPPPATLRCAADVQRAVARALEDFEQRESSSSVFPLAIDVVAEDAMSATSEP
Sbjct: 121 AVPPPATLRCAADVQRAVARALEDFEQRESSSSVFPLAIDVVAEDAMSATSEPSAASDDD 180
Query: 181 XXXXXXXXXXXXXXXXPFELDVVSDMGWSLYYASLAEGLLMEPPXXXXXXXXXXXXXXXX 240
PFELDVVSDMGWSLYYASLAEGLLMEPP
Sbjct: 181 AVTSSSSTTDADEEASPFELDVVSDMGWSLYYASLAEGLLMEPPASGASSDDDDDAIVDS 240
Query: 241 XXXXXXXLWSY 251
LWSY
Sbjct: 241 SDIADVSLWSY 251
>Os09g0522200 DRE-binding protein 1A
Length = 238
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 105/203 (51%), Gaps = 28/203 (13%)
Query: 34 SPPSSKRPAGRTKFHETRHPVFXXXXXXXXXXXWVCEVRVPGRRGCRLWLGTFXXXXXXX 93
+PP KRPAGRTKF ETRHPVF WVCEVRVPGRRGCRLWLGTF
Sbjct: 32 APP--KRPAGRTKFRETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAA 89
Query: 94 XXXXXXXXXXXXXXXX-----CLNFADSAWLLAVPPPATLRCAADVQRAVARALEDFEQR 148
CLNFADSAWLLAVP + R ADV+ AVA A+EDF +R
Sbjct: 90 RAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPR--SYRTLADVRHAVAEAVEDFFRR 147
Query: 149 ESSSSVFPLAIDVVAEDAMSATSEPXXXXXXXXXXXXXXXXXXX-------XXXXPFELD 201
+A+DA+SATS FELD
Sbjct: 148 R------------LADDALSATSSSSTTPSTPRTDDDEESAATDGDESSSPASDLAFELD 195
Query: 202 VVSDMGWSLYYASLAEGLLMEPP 224
V+SDMGW LYYASLA+G+LMEPP
Sbjct: 196 VLSDMGWDLYYASLAQGMLMEPP 218
>Os09g0522100 Similar to C-repeat binding factor 3-like protein
Length = 246
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 39 KRPAGRTKFHETRHPVFXXXXXXXXXXXWVCEVRVPGRRGCRLWLGTFXXXXXXXXXXXX 98
KRPAGRTKF ETRHPV+ WVCEVRVPG+RG RLWLGT+
Sbjct: 31 KRPAGRTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDA 90
Query: 99 XXXX----XXXXXXXCLNFADSAWLLAVPPPATLRCAADVQRAVARALEDFEQRESSSSV 154
CLNF DSAWLLAVPP A A V+RA A+ F QR +++
Sbjct: 91 AMIALRGGAGGGGAACLNFQDSAWLLAVPPAAPSDLAG-VRRAATEAVAGFLQRNKTTNG 149
Query: 155 FPLAIDVVAEDAMSATSEPXXXXXXXXXXXX--------XXXXXXXXXXXPFELDVVSDM 206
+A ++A S S P FELD +M
Sbjct: 150 ASVA--EAMDEATSGVSAPPPLANNAGSSETPGPSSIDGTADTAAGAALDMFELDFFGEM 207
Query: 207 GWSLYYASLAEGLLMEPP 224
+ YYASLAEGLLMEPP
Sbjct: 208 DYDTYYASLAEGLLMEPP 225
>Os08g0545400 Similar to CRT/DRE binding factor (Transcription factor RCBF4)
Length = 236
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 34 SPPSSKRPAGRTKFHETRHPVFXXXXXXXXXXXWVCEVRVPGRRGCRLWLGTFXXXXXXX 93
P S KRPAGRTKF ETRHPVF WVCEVRVPG RG RLW+GTF
Sbjct: 24 GPASPKRPAGRTKFQETRHPVFRGVRRRGRAGRWVCEVRVPGSRGDRLWVGTFDTAEEAA 83
Query: 94 XXXXXXXXXXXXXXXXCLNFADSAWLLAVP--PPATLRCAA-DVQRAVARALEDFEQRES 150
LNFADSAWLL VP P A+ DVQRA + A+ +F++R S
Sbjct: 84 RAHDAAMLALCGASAS-LNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVAEFQRRGS 142
Query: 151 SSSVFPLAIDVVAEDAMSATSEPXXXXXXXXXXXXXXXXXXXXXXXPFELDVVSDMGWSL 210
+++ + DA S D+ M L
Sbjct: 143 TAATAT----ATSGDAASTAPPSSSPVLSPNDDNASSASTPAVAAALDHGDMFGGMRTDL 198
Query: 211 YYASLAEGLLME 222
Y+ASLA+GLL+E
Sbjct: 199 YFASLAQGLLIE 210
>Os09g0522000 Similar to CBF-like protein
Length = 218
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 39 KRPAGRTKFHETRHPVFXXXXXXXXXXX----WVCEVRVPGRRGCRLWLGTFXXXXXXXX 94
KRPAGRTKF ETRHPV+ WVCEVRVPG RG RLWLGTF
Sbjct: 17 KRPAGRTKFRETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTF-ATAEAAA 75
Query: 95 XXXXXXXXXXXXXXXCLNFADSAWLL-AVPPPATLRCAADVQRAVARALEDFEQRESSSS 153
CLNFADSAW + VP A L A V+ AVA A+E F QR+S++
Sbjct: 76 RAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEAF-QRQSAAP 134
Query: 154 VFPLAIDVVAEDAMSATSEPXXXXXXXXXXXXXXXXXXXXXXXPFELD---VVSDMGWSL 210
P + A D FELD M
Sbjct: 135 SSP--AETFANDGDEEEDNKDVLPVAAAEVFDAGA---------FELDDGFRFGGMDAGS 183
Query: 211 YYASLAEGLLMEPP 224
YYASLA+GLL+EPP
Sbjct: 184 YYASLAQGLLVEPP 197
>Os09g0305900
Length = 252
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/48 (89%), Positives = 46/48 (95%)
Query: 126 ATLRCAADVQRAVARALEDFEQRESSSSVFPLAIDVVAEDAMSATSEP 173
ATL AADVQR+VARALEDFEQRESSSSVFPLAID+VAEDAM+ATSEP
Sbjct: 173 ATLHSAADVQRSVARALEDFEQRESSSSVFPLAIDIVAEDAMTATSEP 220
>Os06g0165600 CRT/DRE binding factor (Transcription factor RCBF4)
Length = 253
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 24 TSSSEPCRRLSPPSSKRPAGRTKFHETRHPVFXXXXXXXXXXXWVCEVRVPGRRGCRLWL 83
TSS+E +P S KRPAGRTKF ETRH VF WVC+VRVPG RG R W+
Sbjct: 13 TSSAEA----TPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWI 68
Query: 84 GTFXXXXXXXXXXXXXXXXXXXXXXXCLNFADSAWLLAVP---------PPATLRCA 131
GT LNFADSAWLL VP PPA RCA
Sbjct: 69 GT-SDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAA-RCA 123
>Os06g0127100 Similar to CBF-like protein
Length = 214
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 34 SPPSSKRPAGRTKFHETRHPVFXXXXXXXXXXXWVCEVRVPGRRGCRLWLGTFXXXXXXX 93
+PP KRPAGRTKF ETRHPV+ WVCEVR P ++ R+WLGTF
Sbjct: 15 APP--KRPAGRTKFRETRHPVYRGVRRRGPAGRWVCEVREPNKKS-RIWLGTF-ATAEAA 70
Query: 94 XXXXXXXXXXXXXXXXCLNFADSAWLLAVPPPATLRCAADVQRA 137
CLNFADSA LL V PATL D++RA
Sbjct: 71 ARAHDVAALALRGRGACLNFADSARLLRV-DPATLATPDDIRRA 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,512,213
Number of extensions: 193088
Number of successful extensions: 1359
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 11
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)