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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0677300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CRT/DRE binding factor 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.11 (0.0784) R2 : 0.275
β1 : -0.552 (0.291) R2dD : 0.00613 R2D : 0.00795
β2 : 1.11 (0.192) R2dC : 0.0574 R2C : 0.00479
β3 : 3.91 (0.387) R2dE : 0.177 R2E : 0.125
β4 : -4.09 (0.71) R2dD*C : 0.0536 R2D*C : 0.039
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.667 (0.168) R2dN8 : 0.034 R2N8 : 0.0299
σ : 1.46
deviance : 986.26
__
_____
C
peak time of C : 11.5
E
wheather : wind
threshold : 1.983
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
984.3 1.47 5.1 -0.558 1.13 3.78 -4.26 -1.56 -0.66 11.5 1.931 4 17.1 17.2
986.26 1.46 5.11 -0.552 1.11 3.91 -4.09 -- -0.667 11.5 1.983 4 17 17.2
1054.98 1.51 5.12 -0.738 1.04 3.93 -- 0.521 -0.668 11.7 2.358 4 17.1 17.2
1055.12 1.51 5.12 -0.755 1.03 3.86 -- -- -0.673 11.7 2.359 4 17.1 17.2
1113.88 1.55 5.15 -0.829 -- 3.85 -- 0.218 -0.683 -- 2.937 4 17.1 17.7
1196.76 1.62 5.16 -0.984 0.824 -- -3.34 -- -0.807 13.2 -- -- -- --
1238.9 1.65 5.17 -1.1 0.886 -- -- -- -0.82 14.4 -- -- -- --
1113.91 1.55 5.15 -0.831 -- 3.82 -- -- -0.683 -- 2.935 4 17.1 17.6
1069.89 1.52 5.11 -- 1.05 3.96 -- -- -0.589 11.7 2.316 4 17.1 17.4
1285.31 1.68 5.18 -1.13 -- -- -- -- -0.842 -- -- -- -- --
1270.55 1.67 5.15 -- 0.908 -- -- -- -0.698 14.4 -- -- -- --
1131.87 1.57 5.12 -- -- 3.98 -- -- -0.586 -- 2.957 4 17.1 17.9
1319.2 1.7 5.15 -- -- -- -- -- -0.716 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 998.38 wind 1.0 10 > th dose dependent rect. 17 17
2 1001.36 wind 1.0 90 > th dose dependent rect. 16 17
9 1008.35 wind 1.0 90 > th dose dependent rect. 16 9
10 1008.77 wind 3.0 10 > th dose independent rect. 17 17
15 1011.78 wind 1.0 10 > th dose dependent rect. 17 15
21 1015.28 wind 3.0 90 > th dose independent rect. 16 17
25 1016.80 wind 1.0 90 > th dose dependent rect. 16 11
56 1024.72 wind 1.0 10 > th dose dependent rect. 17 7
61 1026.93 wind 3.0 90 > th dose independent rect. 15 9
69 1028.57 wind 3.0 10 > th dose independent rect. 17 15
84 1032.56 wind 3.0 90 > th dose independent rect. 16 12
90 1032.97 wind 1.0 10 > th dose dependent rect. 17 12
96 1034.23 wind 5.0 90 < th dose independent rect. 19 9
99 1034.88 atmosphere 1005.0 90 < th dose independent rect. 17 1
114 1036.93 wind 3.0 90 > th dose dependent rect. 17 2
118 1037.65 wind 9.0 90 < th dose dependent rect. 19 9
130 1038.86 atmosphere 1010.0 10 < th dose dependent rect. 17 2
135 1039.88 wind 3.0 90 < th dose independent rect. 9 19
143 1040.75 wind 1.0 90 > th dose dependent sin 15 NA
151 1041.94 wind 9.0 90 < th dose dependent sin 15 NA
160 1042.98 humidity 90.0 90 < th dose dependent rect. 17 2
161 1043.05 atmosphere 995.0 90 > th dose independent rect. 9 7
168 1043.47 wind 3.0 10 > th dose independent rect. 17 7
178 1044.26 wind 3.0 10 > th dose independent rect. 17 12
179 1044.41 wind 3.0 90 > th dose independent rect. 17 1
180 1044.49 temperature 20.0 10 > th dose independent rect. 17 2
191 1045.11 atmosphere 995.0 30 > th dose independent rect. 19 23
208 1046.53 wind 9.0 30 < th dose dependent rect. 19 22
210 1046.58 humidity 90.0 10 < th dose dependent rect. 17 2
218 1047.87 wind 1.0 10 > th dose dependent rect. 17 2
220 1047.94 precipitation 0.1 30 < th dose independent rect. 19 23
221 1047.94 precipitation 0.1 30 < th dose dependent rect. 19 23
248 1050.47 atmosphere 995.0 10 > th dose independent rect. 9 8
259 1051.36 temperature 15.0 10 > th dose dependent rect. 17 2
275 1052.93 temperature 10.0 90 > th dose dependent rect. 16 17
277 1053.00 wind 5.0 90 < th dose dependent rect. 9 19
288 1054.00 wind 3.0 90 < th dose independent rect. 14 14
291 1054.25 humidity 90.0 90 < th dose dependent rect. 16 7
293 1054.31 humidity 90.0 10 < th dose dependent rect. 17 6
297 1054.59 wind 3.0 90 < th dose independent sin 16 NA
300 1054.84 temperature 30.0 30 > th dose independent rect. 18 1
347 1056.56 wind 3.0 90 > th dose independent sin 16 NA
355 1057.15 wind 9.0 10 < th dose dependent rect. 19 10
360 1057.47 wind 7.0 30 < th dose independent rect. 19 22
391 1058.69 wind 5.0 90 < th dose dependent rect. 14 14
393 1058.77 wind 3.0 10 < th dose independent rect. 9 20
402 1058.98 humidity 70.0 30 < th dose independent rect. 18 1
428 1060.31 radiation 30.0 90 < th dose independent rect. 16 17
434 1060.53 precipitation 0.1 90 < th dose independent rect. 9 7
436 1060.53 precipitation 0.1 90 < th dose dependent rect. 9 7
447 1061.04 wind 9.0 90 < th dose independent rect. 9 7
462 1061.79 temperature 10.0 10 > th dose dependent rect. 17 16
463 1061.82 temperature 10.0 90 > th dose independent rect. 9 7
464 1061.82 atmosphere 1015.0 90 < th dose independent rect. 9 7
465 1061.82 temperature 10.0 90 > th dose independent rect. 16 17
504 1063.43 temperature 10.0 270 > th dose dependent rect. 14 18
516 1064.07 temperature 30.0 30 > th dose dependent rect. 18 1
536 1064.33 humidity 90.0 90 < th dose independent rect. 16 3
543 1064.89 wind 1.0 90 > th dose independent rect. 9 7
566 1066.10 wind 9.0 10 < th dose independent rect. 9 8
575 1066.37 temperature 10.0 10 > th dose independent rect. 17 2
577 1066.37 atmosphere 1010.0 10 < th dose independent rect. 17 2
579 1066.37 radiation 20.0 10 < th dose independent rect. 17 2
582 1066.37 temperature 10.0 10 > th dose independent rect. 19 22
595 1066.93 temperature 30.0 30 < th dose independent sin 12 NA
619 1067.27 temperature 30.0 30 > th dose independent sin 11 NA
623 1067.46 wind 1.0 10 > th dose independent rect. 9 8
627 1067.68 radiation 1.0 90 > th dose independent rect. 9 7
628 1067.68 wind 9.0 90 < th dose independent rect. 16 17
644 1068.16 radiation 40.0 10 < th dose dependent rect. 17 2
652 1068.36 temperature 10.0 10 > th dose independent rect. 9 8
654 1068.36 atmosphere 1015.0 10 < th dose independent rect. 9 8
655 1068.36 precipitation 0.1 10 < th dose independent rect. 9 8
656 1068.36 temperature 10.0 10 > th dose independent rect. 17 16
657 1068.36 precipitation 0.1 10 < th dose dependent rect. 9 8
665 1068.75 precipitation 0.1 10 < th dose independent rect. 17 2
667 1068.75 precipitation 0.1 10 < th dose dependent rect. 17 2
696 1069.22 radiation 40.0 10 < th dose independent rect. 17 16
719 1069.81 humidity 90.0 90 < th dose dependent rect. 16 15
725 1070.13 precipitation 0.1 90 < th dose independent rect. 19 9
727 1070.13 precipitation 0.1 90 < th dose dependent rect. 19 9
730 1070.20 humidity 60.0 270 > th dose independent rect. 18 10
733 1070.23 wind 9.0 10 < th dose independent rect. 17 2
776 1071.17 radiation 1.0 90 > th dose independent rect. 17 2
949 1073.27 radiation 1.0 270 < th dose dependent rect. 18 10
977 1073.96 atmosphere 1015.0 90 < th dose independent rect. 16 17
986 1074.14 radiation 1.0 270 < th dose independent rect. 18 10
992 1074.26 temperature 20.0 90 > th dose independent rect. 16 7