BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0513400 Os05g0513400|AK069309
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0513400 Protein of unknown function DUF803 family protein 652 0.0
Os05g0430700 Protein of unknown function DUF803 family protein 412 e-115
Os01g0873700 Protein of unknown function DUF803 family protein 409 e-114
Os01g0882300 Protein of unknown function DUF803 family protein 395 e-110
Os05g0424800 Similar to AER274Wp 384 e-107
Os06g0715700 Protein of unknown function DUF803 family protein 376 e-104
AK073285 362 e-100
Os04g0373000 Protein of unknown function DUF803 family protein 361 e-100
Os02g0498300 Protein of unknown function DUF803 family protein 279 3e-75
Os11g0197400 Protein of unknown function DUF803 family protein 154 1e-37
>Os05g0513400 Protein of unknown function DUF803 family protein
Length = 354
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/354 (92%), Positives = 326/354 (92%)
Query: 1 MEXXXXXXQELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLL 60
ME QELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLL
Sbjct: 1 MEGGGGGGQELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLL 60
Query: 61 EPLWWVGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLG 120
EPLWWVGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLG
Sbjct: 61 EPLWWVGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLG 120
Query: 121 CVMCIAGSVVIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQ 180
CVMCIAGSVVIVIHAPQEQEITSVREIWNMAIQPA YGQ
Sbjct: 121 CVMCIAGSVVIVIHAPQEQEITSVREIWNMAIQPAFLLYVASVIVVVFVLVFHFSPLYGQ 180
Query: 181 SNVLIYTAICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNY 240
SNVLIYTAICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNY
Sbjct: 181 SNVLIYTAICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNY 240
Query: 241 LNKALDTFNTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTIL 300
LNKALDTFNTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTIL
Sbjct: 241 LNKALDTFNTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTIL 300
Query: 301 LHVTKDYERIPQSRSIYAPLSPSLTARLNGDLLKHVEDDRNPDEEKALRRQEMY 354
LHVTKDYERIPQSRSIYAPLSPSLTARLNGDLLKHVEDDRNPDEEKALRRQEMY
Sbjct: 301 LHVTKDYERIPQSRSIYAPLSPSLTARLNGDLLKHVEDDRNPDEEKALRRQEMY 354
>Os05g0430700 Protein of unknown function DUF803 family protein
Length = 355
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/346 (58%), Positives = 256/346 (73%), Gaps = 3/346 (0%)
Query: 10 ELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGMI 69
+L N+KG +LA+ SS FIG SFI+KKKGLRRA A+G RAGVGGY YLLEPLWWVGMI
Sbjct: 11 DLFAANLKGSLLAVASSAFIGVSFIVKKKGLRRAG-AAGPRAGVGGYGYLLEPLWWVGMI 69
Query: 70 TMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGSV 129
TM++GE+ANFVAY FAPAVLVTPLGALSIIVSAVLAHFILNE+L +GVLGCV+CI GS
Sbjct: 70 TMLIGEIANFVAYMFAPAVLVTPLGALSIIVSAVLAHFILNEKLQRMGVLGCVLCIVGST 129
Query: 130 VIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTAI 189
VI++HAP+E+ +SV +IW++A QPA YGQ+N+ +Y I
Sbjct: 130 VIILHAPEEETPSSVEQIWHLATQPAFLCYVAFALVVSLILMAHCAPRYGQTNIAVYIGI 189
Query: 190 CSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTFN 249
CS++GSL+VMS+KA+G ++KLT EG NQ Y +TW F + A C++ Q+ YLNKALDTFN
Sbjct: 190 CSVIGSLTVMSIKAVGIAIKLTIEGINQAGYFQTWLFATVSAICIIIQLIYLNKALDTFN 249
Query: 250 TAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYER 309
TA+VSPIYY MFT+LTILAS IMFKDWSGQS+ SI SEICG + VLSGT++LH T++Y++
Sbjct: 250 TAVVSPIYYAMFTSLTILASAIMFKDWSGQSISSIASEICGFLTVLSGTVVLHSTREYDQ 309
Query: 310 IPQSRSIYAPLSP-SLTARLNGDLLKHVEDDRNPDEEKALRRQEMY 354
S +Y PL P + NG+ +K EDD + + RQ+ +
Sbjct: 310 T-ISPDLYTPLPPIYWHIQGNGETVKQKEDDSLSADFITVVRQDYF 354
>Os01g0873700 Protein of unknown function DUF803 family protein
Length = 363
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/347 (58%), Positives = 253/347 (72%), Gaps = 4/347 (1%)
Query: 10 ELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGMI 69
+L N+KG +LA+ SS FIG SFI+KKKGL RA A+G RAGVGGY YLLEPLWWVGM+
Sbjct: 18 DLFAANLKGSLLAVASSAFIGVSFIVKKKGLLRAG-AAGSRAGVGGYGYLLEPLWWVGMV 76
Query: 70 TMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGSV 129
TM+VGE+ANF+AY FAPAVLVTPLGALSIIVSAVLAHF LNE+L +GVLGCV+CI GS
Sbjct: 77 TMLVGEIANFIAYMFAPAVLVTPLGALSIIVSAVLAHFTLNEKLQRVGVLGCVLCIVGST 136
Query: 130 VIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTAI 189
VI++HAPQE+ +SV EIW++AIQP YGQ N+++Y I
Sbjct: 137 VIILHAPQERTPSSVDEIWHLAIQPDFLCYATAAVAVSLFLMIYCAPRYGQMNIMVYVGI 196
Query: 190 CSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTFN 249
CS++GSL+VMS+KA+G ++KLT EG NQ Y +TW F +I TC+ Q+ YLNKALDTFN
Sbjct: 197 CSVIGSLTVMSIKAVGIAIKLTIEGINQAGYFQTWLFAVISITCIAVQLVYLNKALDTFN 256
Query: 250 TAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYER 309
A+VSPIYY MFTTLTILAS IMFKDWSGQS I SEICG + VL+GT++LH T++ ++
Sbjct: 257 AAVVSPIYYAMFTTLTILASAIMFKDWSGQSASKIASEICGFLTVLAGTLVLHSTREPDQ 316
Query: 310 IPQSRSIYAPLSPSLTARL--NGDLLKHVEDDRNPDEEKALRRQEMY 354
S +YAPL P + + NGD+ K EDD P + + RQ+ +
Sbjct: 317 T-LSADLYAPLPPKIYWHIQGNGDIGKQKEDDSLPCDIITVMRQDYF 362
>Os01g0882300 Protein of unknown function DUF803 family protein
Length = 360
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/330 (60%), Positives = 243/330 (73%), Gaps = 14/330 (4%)
Query: 9 QELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGM 68
+ +S DN+KG+VLAL SS FIGASFI+KKK + A ASG+RAGVGGYSYL EPLWW GM
Sbjct: 20 EGMSADNIKGLVLALSSSFFIGASFIVKKK-GLKKAGASGVRAGVGGYSYLYEPLWWAGM 78
Query: 69 ITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGS 128
ITMIVGEVANF AYAFAPA+LVTPLGALSII+SAVLA +L E+LH G+LGCV+C+ GS
Sbjct: 79 ITMIVGEVANFAAYAFAPAILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGS 138
Query: 129 VVIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTA 188
IV+HAPQE+EI SV E+W +A +PA YGQ+++++Y
Sbjct: 139 TTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIG 198
Query: 189 ICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTF 248
+CSL+GSLSVMSVKALG +LKLTF G NQL+YP+TW F ++V C+LTQMNYLNKALDTF
Sbjct: 199 VCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTF 258
Query: 249 NTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYE 308
NTA+VSPIYY MFT+LTILASVIMFKDW Q+ I +E+CG + +LSGT LLH TKD
Sbjct: 259 NTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKD-- 316
Query: 309 RIPQSRSIYAPLSPSLTARLNGDLLKHVED 338
+ L P+L R+ KH ED
Sbjct: 317 -------MVDGLPPTLPIRIP----KHDED 335
>Os05g0424800 Similar to AER274Wp
Length = 358
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/341 (59%), Positives = 245/341 (71%), Gaps = 14/341 (4%)
Query: 9 QELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGM 68
+ +S DNVKG++LAL SS FIGASFI+KKK + A ASG+RAGVGGYSYLLEPLWW GM
Sbjct: 11 EGMSADNVKGLLLALSSSLFIGASFIVKKK-GLKKAGASGVRAGVGGYSYLLEPLWWAGM 69
Query: 69 ITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGS 128
MIVGE+ANF AYAFAPA+LVTPLGALSII+SAVLAH IL E+LH G+LGC++C+ GS
Sbjct: 70 TAMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILREKLHIFGILGCILCVVGS 129
Query: 129 VVIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTA 188
IV+HAP E++I SV E+W++A +PA YGQ+++++Y
Sbjct: 130 TSIVLHAPPERQIESVAEVWDLATEPAFLLYAAIVLAAAFVLIFHFVPQYGQTHIMVYIG 189
Query: 189 ICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTF 248
+CSL+GSLSVMSVKALG +LKLTF G NQLVYP+ W F+L V C++TQMNYLNKALDTF
Sbjct: 190 VCSLVGSLSVMSVKALGIALKLTFSGMNQLVYPQMWVFLLFVVACIVTQMNYLNKALDTF 249
Query: 249 NTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYE 308
NTA+VSPIYY MFT+LTILASVIMFKDW Q I +E+CG + +LSGT LLH TKD
Sbjct: 250 NTAVVSPIYYTMFTSLTILASVIMFKDWDRQDPTQIVTEMCGFVTILSGTFLLHKTKD-- 307
Query: 309 RIPQSRSIYAPLSPSLTARLNGDLLKHVEDDRNPDEEKALR 349
+ L P+L RL KH E+D E LR
Sbjct: 308 -------MVDGLPPNLPIRLP----KHAEEDGYAAEGIPLR 337
>Os06g0715700 Protein of unknown function DUF803 family protein
Length = 344
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 237/331 (71%), Gaps = 6/331 (1%)
Query: 13 TDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGMITMI 72
+DN G+ LA+ SS FIGASFI+KK GL RA G G Y+YLLEPLWW GM+TM+
Sbjct: 4 SDNTVGLSLAVASSAFIGASFILKKIGLIRAGKGGVRAGGGG-YTYLLEPLWWAGMMTML 62
Query: 73 VGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGSVVIV 132
+GE+ANFVAY FAPAVLVTPLGALSIIVS+ LAHF+L ERL LGVLGCV CI GSV++V
Sbjct: 63 LGEIANFVAYTFAPAVLVTPLGALSIIVSSFLAHFVLKERLEKLGVLGCVSCIVGSVIVV 122
Query: 133 IHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTAICSL 192
IHAPQE SV EIWN+AIQP YGQ+N++IY ICS
Sbjct: 123 IHAPQEHMPNSVEEIWNLAIQPGFLTYAVATLVVVAALVLFFEPRYGQTNIMIYLGICSS 182
Query: 193 MGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTFNTAI 252
MGSL+V+S+KA+G ++KLT +G NQ+ YP TW FV+I CV++Q+NYLNKALDTF+ A+
Sbjct: 183 MGSLTVVSIKAIGVAIKLTLDGMNQVAYPHTWLFVIIAIICVVSQINYLNKALDTFDLAV 242
Query: 253 VSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYERIPQ 312
VSPIYYVMFTTLTI+AS IMFKDW+GQS SI SE CGLI +L+GTI+LH K+ E
Sbjct: 243 VSPIYYVMFTTLTIVASGIMFKDWAGQSFSSIASEFCGLITILTGTIMLHTAKE-EETGS 301
Query: 313 SRSIYAPL---SPSLTARLNGD-LLKHVEDD 339
S ++ PL S S L D LLK+V +D
Sbjct: 302 SAALPWPLDRGSISWCISLGSDNLLKNVNED 332
>AK073285
Length = 361
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/300 (58%), Positives = 215/300 (71%), Gaps = 11/300 (3%)
Query: 52 GVGGYSYLLEPLWWVGMITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNE 111
GVGGYSYL EPLWWVGMITM+VGEVANF AYAFAPA+LVTPLGALSII+SA+LAHF+L +
Sbjct: 63 GVGGYSYLYEPLWWVGMITMVVGEVANFAAYAFAPAILVTPLGALSIIISAILAHFMLRK 122
Query: 112 RLHALGVLGCVMCIAGSVVIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXX 171
+LH G+LGC++C+ GS IV+HAP E+EI SV E+W++A +PA
Sbjct: 123 KLHIFGILGCILCVVGSTTIVLHAPAEREIESVTEVWDLATEPAFMFYVSVVLAMVAILV 182
Query: 172 XXXXXXYGQSNVLIYTAICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVA 231
YGQ++V++Y +CSL+GS+SVMSVKALG +LKLTF GTNQL+YP+TW F L+V
Sbjct: 183 CRFVPLYGQTHVMVYIGVCSLVGSISVMSVKALGIALKLTFCGTNQLIYPQTWAFTLVVL 242
Query: 232 TCVLTQMNYLNKALDTFNTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGL 291
+C++TQMNYLNKALDTFNTA+VSPIYY MFT+LTILASVIMFKDW Q+ I +E CG
Sbjct: 243 SCIVTQMNYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEACGF 302
Query: 292 IVVLSGTILLHVTKDYE---------RIPQSRSIYAPLSPSLTARLNGDLLKHVEDDRNP 342
+ +LSGT LLH TKD R+P S S S G L+ E R+P
Sbjct: 303 VTILSGTFLLHKTKDMADGLSTSSSFRLPTSSSFR--FSKQTDEECEGIPLRSSESFRSP 360
>Os04g0373000 Protein of unknown function DUF803 family protein
Length = 317
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/296 (58%), Positives = 222/296 (75%), Gaps = 1/296 (0%)
Query: 11 LSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGMIT 70
+S DNV+G LA SS FIG+SF+IKK GL++A A G+RAG GGYSYL EPLWW+GM
Sbjct: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDA-GVRAGSGGYSYLYEPLWWIGMTA 61
Query: 71 MIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGSVV 130
MI+GEVANF AYAFAPA+LVTPLGALSII SAVLAHFIL ERLH G++GC++C+ GSV
Sbjct: 62 MILGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVG 121
Query: 131 IVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTAIC 190
IV+HAP+E++I SV EIW++A QP Q +L Y AIC
Sbjct: 122 IVLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAIC 181
Query: 191 SLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTFNT 250
SLMGSL+V+SVKA+ +LKL+F G NQ +Y TWFF+++V C L Q+NYLNKALD+FNT
Sbjct: 182 SLMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWFFIVVVVICCLVQLNYLNKALDSFNT 241
Query: 251 AIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKD 306
A+VSP+YYVMFT LTI+A++IM+KDW+ Q+ I +E+CG + +++GT LLH T+D
Sbjct: 242 AVVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRD 297
>Os02g0498300 Protein of unknown function DUF803 family protein
Length = 268
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 179/244 (73%)
Query: 68 MITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAG 127
MITMI+GEVANF AYAFAPAVLVTPLGALSII SAVLAHF+L E+LH GV+GC++C+ G
Sbjct: 1 MITMILGEVANFAAYAFAPAVLVTPLGALSIIFSAVLAHFVLKEKLHMFGVVGCILCVVG 60
Query: 128 SVVIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYT 187
SV IV+HAP+E+EI S+ EIW++A +P G +L+Y
Sbjct: 61 SVGIVLHAPKEREIDSIDEIWHLATEPGFIVYSCVAVVSVLFLIFWVAERSGHRKMLVYI 120
Query: 188 AICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDT 247
AICS MGSL+V+SVKA+ +LKL+F G+NQ +Y +TWFF+++V C L Q+NYLNKALD+
Sbjct: 121 AICSTMGSLTVISVKAVAIALKLSFGGSNQFIYIQTWFFIVVVIVCCLVQLNYLNKALDS 180
Query: 248 FNTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDY 307
FNTA+VSP+YYVMFT LTI A++IM+KD ++ I +++CG + +++GT LLH T+D
Sbjct: 181 FNTAVVSPVYYVMFTILTIFANMIMYKDSFSRNATQIATQLCGFVTIVAGTFLLHKTRDM 240
Query: 308 ERIP 311
P
Sbjct: 241 GNEP 244
>Os11g0197400 Protein of unknown function DUF803 family protein
Length = 139
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 93/129 (72%)
Query: 70 TMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGSV 129
T+IVGE+ANF AYAFAPA+LVTPLGALSII+SA LAH IL E+LH G+LGCV+C+ GS+
Sbjct: 1 TVIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHAILQEKLHTFGILGCVLCVVGSI 60
Query: 130 VIVIHAPQEQEITSVREIWNMAIQPAXXXXXXXXXXXXXXXXXXXXXXYGQSNVLIYTAI 189
IV+HAPQE+ I SVRE+W++A +P +GQ+N+++Y +
Sbjct: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCYAAIVVAAALVLIYFVVPQHGQTNIMVYIGV 120
Query: 190 CSLMGSLSV 198
CSL+GSL+V
Sbjct: 121 CSLLGSLTV 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,623,492
Number of extensions: 346722
Number of successful extensions: 804
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 10
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)