Os05g0424800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AER274Wp.
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Os05g0424800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AER274Wp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.02 | 0.399 | 7.97 | 0.103 | 0.985 | -0.828 | -0.269 | -0.496 | -0.0241 | 6.99 | 21.08 | 1307 | -- | -- |
| 72.42 | 0.396 | 7.96 | 0.189 | 0.966 | -0.746 | -0.221 | -- | -0.00867 | 6.83 | 21.1 | 1119 | -- | -- |
| 72.2 | 0.396 | 7.97 | 0.0978 | 0.984 | -0.824 | -- | -0.493 | -0.0262 | 6.95 | 21.06 | 1303 | -- | -- |
| 72.54 | 0.397 | 7.96 | 0.19 | 0.964 | -0.751 | -- | -- | -0.00576 | 6.81 | 21.06 | 1119 | -- | -- |
| 113.35 | 0.496 | 7.98 | 0.127 | -- | -0.749 | -- | -0.0649 | 0.0292 | -- | 21.9 | 630 | -- | -- |
| 88.49 | 0.441 | 8 | -0.116 | 0.98 | -- | -0.254 | -- | -0.202 | 7.17 | -- | -- | -- | -- |
| 88.66 | 0.441 | 8 | -0.122 | 0.98 | -- | -- | -- | -0.202 | 7.13 | -- | -- | -- | -- |
| 113.26 | 0.496 | 7.97 | 0.164 | -- | -0.764 | -- | -- | 0.0529 | -- | 21.88 | 633 | -- | -- |
| 73.28 | 0.399 | 7.96 | -- | 0.958 | -0.61 | -- | -- | -0.00904 | 6.8 | 22.08 | 1078 | -- | -- |
| 139.33 | 0.552 | 8.02 | -0.103 | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
| 89.05 | 0.441 | 8 | -- | 0.979 | -- | -- | -- | -0.188 | 7.14 | -- | -- | -- | -- |
| 113.83 | 0.497 | 7.98 | -- | -- | -0.726 | -- | -- | 0.0297 | -- | 21.99 | 635 | -- | -- |
| 139.61 | 0.552 | 8.02 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 2 | 71.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 3 | 71.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 10 | 71.67 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 27 | 71.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 17 |
| 32 | 71.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 38 | 72.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 55 | 72.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 56 | 72.14 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 65 | 72.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 66 | 72.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 72 | 72.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 78 | 72.28 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 189 | 72.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 193 | 72.84 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 195 | 72.85 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 16 |
| 242 | 73.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 244 | 73.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 275 | 73.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 281 | 73.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 285 | 73.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 301 | 73.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 310 | 73.18 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 317 | 73.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 318 | 73.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 322 | 73.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 354 | 73.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 381 | 73.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 399 | 73.31 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 400 | 73.31 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 404 | 73.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 418 | 73.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 457 | 73.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 470 | 73.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 489 | 73.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 508 | 73.42 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 538 | 73.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 560 | 73.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 592 | 73.52 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 607 | 73.53 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 660 | 73.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 668 | 73.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 753 | 73.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 834 | 73.84 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 14 |
| 857 | 73.87 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 877 | 73.91 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 888 | 73.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |