Os04g0373000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF803 family protein.
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Os04g0373000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF803 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.84 | 0.476 | 6.94 | -1.6 | 1.07 | 1.66 | 0.535 | -4.25 | -0.242 | 4.94 | 24.4 | 1086 | -- | -- |
| 109.71 | 0.488 | 6.84 | -0.631 | 1.07 | 1.29 | 0.426 | -- | -0.0389 | 4.91 | 23.78 | 1102 | -- | -- |
| 103.51 | 0.474 | 6.94 | -1.59 | 1.06 | 1.63 | -- | -4.16 | -0.233 | 4.85 | 24.5 | 1105 | -- | -- |
| 109.69 | 0.488 | 6.83 | -0.608 | 1.03 | 1.21 | -- | -- | -0.00115 | 4.61 | 24 | 1135 | -- | -- |
| 158.08 | 0.586 | 6.95 | -1.59 | -- | 1.76 | -- | -3.72 | -0.241 | -- | 24.3 | 1190 | -- | -- |
| 154.54 | 0.583 | 6.79 | -0.237 | 1.18 | -- | 0.364 | -- | 0.18 | 3.9 | -- | -- | -- | -- |
| 154.92 | 0.583 | 6.79 | -0.242 | 1.18 | -- | -- | -- | 0.178 | 3.87 | -- | -- | -- | -- |
| 164.04 | 0.597 | 6.84 | -0.628 | -- | 1.4 | -- | -- | 0.00107 | -- | 24.03 | 1195 | -- | -- |
| 118.73 | 0.508 | 6.8 | -- | 1.06 | 1.1 | -- | -- | 0.0857 | 4.61 | 24.13 | 1106 | -- | -- |
| 231.16 | 0.71 | 6.79 | -0.193 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 156.46 | 0.585 | 6.78 | -- | 1.17 | -- | -- | -- | 0.205 | 3.87 | -- | -- | -- | -- |
| 173.93 | 0.614 | 6.82 | -- | -- | 1.25 | -- | -- | 0.0847 | -- | 24.1 | 1192 | -- | -- |
| 232.15 | 0.711 | 6.79 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 3 | 97.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 6 | 97.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 18 | 98.72 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 22 | 99.35 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 28 | 100.18 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 10 |
| 38 | 100.53 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 47 | 100.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 51 | 100.90 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 7 |
| 69 | 101.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 102 | 102.27 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 182 | 103.68 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 211 | 104.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 252 | 104.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 276 | 105.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 308 | 105.55 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 563 | 108.94 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 595 | 109.25 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 615 | 109.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 643 | 109.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 709 | 110.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 711 | 110.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 712 | 110.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 720 | 110.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 727 | 110.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 730 | 110.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 738 | 110.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 744 | 110.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 745 | 110.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 789 | 110.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 804 | 110.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 821 | 110.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 869 | 110.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 888 | 110.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 892 | 110.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 898 | 110.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |