BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0373000 Os04g0373000|Os04g0373000
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71900.1 | chr1:27061754-27064053 FORWARD LENGTH=344 380 e-106
AT4G13800.1 | chr4:8002129-8003858 REVERSE LENGTH=337 376 e-105
AT1G34470.1 | chr1:12604574-12606758 FORWARD LENGTH=369 374 e-104
AT3G23870.1 | chr3:8620253-8621755 FORWARD LENGTH=336 356 1e-98
AT4G09640.1 | chr4:6088433-6090604 REVERSE LENGTH=387 345 2e-95
AT2G21120.1 | chr2:9052103-9054266 REVERSE LENGTH=329 345 2e-95
AT4G38730.1 | chr4:18080484-18082305 REVERSE LENGTH=327 335 2e-92
>AT1G71900.1 | chr1:27061754-27064053 FORWARD LENGTH=344
Length = 343
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/307 (59%), Positives = 228/307 (74%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
MS DN++G LA SSS FIG+SF++KK GLKKA G RAG GGYSYLYEPLWWIGMT M
Sbjct: 15 MSSDNIKGLVLALSSSLFIGASFIVKKKGLKKAASTGTRAGVGGYSYLYEPLWWIGMTTM 74
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
+LGE+ ILVTPLGA+SII SAVLAH IL+E+LH+FGI+GC LCVVGS I
Sbjct: 75 LLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIFGILGCALCVVGSTTI 134
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
VLHAP+E++IDSV E+W+LAT+P F+ Y+ + + A+ LI V + Q ++ YI ICS
Sbjct: 135 VLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVPQYGQTNVMVYIGICS 194
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
L+GSL+V+SVKA+ IALKL+F+G NQ Y TW NYLNKALD+FNTA
Sbjct: 195 LVGSLSVMSVKALGIALKLTFSGTNQLFYPQTWIFTLVVLTCVVTQLNYLNKALDTFNTA 254
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQ 302
+VSP+YYVMFT LTI+A++IM+KDW QN TQI TE+CGFVTI++GTFLLH+T+DM
Sbjct: 255 IVSPIYYVMFTSLTILASVIMFKDWDRQNGTQIVTEICGFVTILSGTFLLHRTKDMVEGS 314
Query: 303 SESSSLR 309
S LR
Sbjct: 315 SVILPLR 321
>AT4G13800.1 | chr4:8002129-8003858 REVERSE LENGTH=337
Length = 336
Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/309 (65%), Positives = 237/309 (76%), Gaps = 4/309 (1%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
MS DN+ G LA SSS FIGSSF+IKK GLKKAG +G RAG GGY YLYEP WW GM M
Sbjct: 4 MSPDNIHGVILAVSSSIFIGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMITM 63
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
I+GE+ ILVTPLGALSIIFSAVLAHFIL+E+LHMFGI+GC+LCVVGS I
Sbjct: 64 IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGSTTI 123
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
VLHAP E+ I+SV ++WHLAT+PGF+ YS + +VV L LIF+ R + M+ Y+ ICS
Sbjct: 124 VLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGICS 183
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
LMGSLTV+SVKAVAIA+KL+F+G+NQF Y W NYLNKALD+FNTA
Sbjct: 184 LMGSLTVMSVKAVAIAIKLTFSGMNQFKYFHAWIFIIVVTICCILQINYLNKALDNFNTA 243
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQ 302
V+SPVYYVMFT TI+A+MIM+KDWASQ+ QIATELCGFVTI++GTFLLHKT+DMGN
Sbjct: 244 VISPVYYVMFTTFTILASMIMFKDWASQSGLQIATELCGFVTILSGTFLLHKTKDMGN-- 301
Query: 303 SESSSLRGE 311
S+SLRG
Sbjct: 302 --STSLRGS 308
>AT1G34470.1 | chr1:12604574-12606758 FORWARD LENGTH=369
Length = 368
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/316 (58%), Positives = 239/316 (75%), Gaps = 2/316 (0%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
MS DN++G LA SSS FIG+SF++KK GLK+AG +G+RAGSGGYSYL EPLWW+GM M
Sbjct: 15 MSSDNIKGLVLALSSSLFIGASFIVKKKGLKRAGASGLRAGSGGYSYLLEPLWWVGMITM 74
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
I+GE+ ILVTPLGALSII SA LAH IL E+LH FG++GC+LCVVGS+ I
Sbjct: 75 IVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTFGLLGCVLCVVGSITI 134
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
VLHAP+E++IDSV ++W+LAT+P F++Y+ V A+ILI V + Q ++ YI +CS
Sbjct: 135 VLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVPQYGQSHVMVYIGVCS 194
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
L+GSL+V+SVKA+ IALKL+F+G+NQ IY TW NYLNKALD+FNTA
Sbjct: 195 LVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWVFTLIVLTCVITQMNYLNKALDTFNTA 254
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDM--GN 300
VVSP+YYVMFT LTI+A++IM+KDW Q+ TQI TELCGFVTI++GTFLLHKT+DM G+
Sbjct: 255 VVSPIYYVMFTSLTILASVIMFKDWDRQDGTQIVTELCGFVTILSGTFLLHKTKDMVDGS 314
Query: 301 EQSESSSLRGECELQN 316
+ +LR +L++
Sbjct: 315 SSLGNLALRLPKQLED 330
>AT3G23870.1 | chr3:8620253-8621755 FORWARD LENGTH=336
Length = 335
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/306 (66%), Positives = 234/306 (76%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
MS DN+ G LA SSS FIGSSF+IKK GLKKAG +GVRAG GGY YL EP WW GM M
Sbjct: 4 MSPDNINGVILAVSSSIFIGSSFIIKKKGLKKAGASGVRAGEGGYGYLKEPWWWAGMITM 63
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
I+GEV ILVTPLGALSIIFSAVLAHFILKE+LHMFGI+GCILCVVGS I
Sbjct: 64 IVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGSTTI 123
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
VLHAP E+KI+SV +IW LA +PGF+VYS + V+V ILIF+ R + M+ Y+ ICS
Sbjct: 124 VLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGICS 183
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
LMGSLTV+SVKAVAIA+KL+F+G NQF Y TW NYLNKALD+FNTA
Sbjct: 184 LMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVVATCCILQINYLNKALDTFNTA 243
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQ 302
V+SPVYYVMFT TIIA+MIM+KDWASQ+ +IATELCGFVTI++GTFLLHKT+DMGN
Sbjct: 244 VISPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCGFVTILSGTFLLHKTKDMGNSA 303
Query: 303 SESSSL 308
S S+
Sbjct: 304 SGRGSI 309
>AT4G09640.1 | chr4:6088433-6090604 REVERSE LENGTH=387
Length = 386
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/311 (59%), Positives = 226/311 (72%), Gaps = 6/311 (1%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
MS DNV+G LA SSS FIG+SF++KK GLKKAG +G+RAGSGGYSYL EPLWWIGM M
Sbjct: 15 MSSDNVKGLVLALSSSIFIGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPLWWIGMITM 74
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
I+GE+ ILVTPLGALSII SA LAH IL+E+LH FGI+GC LC+VGSV I
Sbjct: 75 IVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCALCIVGSVTI 134
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
VLHAP+E+ I SV E+W+LAT+P F+ Y+ V A++LI + Q ++ YI +CS
Sbjct: 135 VLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHVMVYIGVCS 194
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
L+GSL+V+SVKA+ IALKL+F+G NQ Y TW NYLNKALD+FNTA
Sbjct: 195 LIGSLSVMSVKALGIALKLTFSGTNQLGYPQTWVFTVIVLFCVITQMNYLNKALDTFNTA 254
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDM---- 298
VVSP+YYVMFT LTI+A++IM+KDW Q+ TQI TELCGFVTI++GTFLLH T DM
Sbjct: 255 VVSPIYYVMFTSLTILASVIMFKDWDRQSGTQIMTELCGFVTILSGTFLLHTTTDMVDGE 314
Query: 299 --GNEQSESSS 307
GN SE S
Sbjct: 315 SKGNLSSEEDS 325
>AT2G21120.1 | chr2:9052103-9054266 REVERSE LENGTH=329
Length = 328
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 214/307 (69%)
Query: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
M DN +G LA +SS FIGSSF++KK GLK+AG G RAG GGY+YL EPLWW GM M
Sbjct: 1 METDNGKGLILAVASSVFIGSSFILKKKGLKRAGAIGTRAGYGGYTYLLEPLWWAGMVTM 60
Query: 63 ILGEVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
I+GE +LVTPLGALSII SAVLAHF+LKE+L G++GC+ C+VGSV I
Sbjct: 61 IVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHFLLKEKLKKMGVLGCVSCIVGSVVI 120
Query: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
V+HAPKE+ +SV EIW+LATQP F++Y + + + L LI Q +L YI ICS
Sbjct: 121 VIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIVLALILHFEPLCGQTNILVYIGICS 180
Query: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTA 242
LMG+LTV+S+KA+ IA+KL+ GV+Q Y TW YLNKALD+FN A
Sbjct: 181 LMGALTVMSIKAIGIAIKLTMEGVSQIGYPQTWLFVMVAVTCVVTQLIYLNKALDTFNAA 240
Query: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQ 302
+VSPVYYVMFT LTI+A+ IM+KDW+ Q+A +A+ELCGF+T++ GT +LH TR+ +Q
Sbjct: 241 IVSPVYYVMFTTLTIVASAIMFKDWSGQDAASVASELCGFITVLTGTMILHGTREEEQQQ 300
Query: 303 SESSSLR 309
+ S +R
Sbjct: 301 ASSEHVR 307
>AT4G38730.1 | chr4:18080484-18082305 REVERSE LENGTH=327
Length = 326
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 207/304 (68%), Gaps = 2/304 (0%)
Query: 6 DNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAMILG 65
DN G LA SSS FIGSSF++KK GLK+A G RAG GGY+YL EPLWW+G+ M G
Sbjct: 4 DNEMGLVLAVSSSVFIGSSFILKKKGLKRAAANGTRAGFGGYTYLLEPLWWVGLVTMTFG 63
Query: 66 EVXXXXXXXXXXXILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGIVLH 125
E+ +LVTPLGALSII SAVLAHF+L E+L G+ GC+ C+VGSV IV+H
Sbjct: 64 EIANFVAYVYAPAVLVTPLGALSIIISAVLAHFLLDEKLRKMGVWGCVCCIVGSVMIVIH 123
Query: 126 APKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICSLMG 185
AP+E+ +SV EIW LA QP F++Y +++ + L LI + Q +L YI ICSLMG
Sbjct: 124 APQEQTPNSVEEIWKLAMQPAFLIYVAISMSIVLALILYCEPLCGQTNILVYIGICSLMG 183
Query: 186 SLTVISVKAVAIALKLSFNGVNQFIYVPTWXXXXXXXXXXXXXXNYLNKALDSFNTAVVS 245
SLTV+S+KAV IA+KL+F G+NQ Y TW YLNKALD+FN A+VS
Sbjct: 184 SLTVMSIKAVGIAIKLTFEGINQIWYPETWFFAMVAAICVVMQMIYLNKALDTFNAAIVS 243
Query: 246 PVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQSES 305
P+YYVMFT LTI+A+ IM+KDW QN IA+E+CGF+T++ GT +LH TR+ EQ+
Sbjct: 244 PIYYVMFTTLTIVASAIMFKDWNGQNTDSIASEICGFITVLTGTVILHSTRE--EEQASP 301
Query: 306 SSLR 309
+R
Sbjct: 302 RRMR 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,676,795
Number of extensions: 199743
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)