BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0462700 Os05g0462700|AK105816
         (103 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0539500  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os09g0553100  Histone H4                                          162   3e-41
Os09g0433600  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os07g0549900  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os05g0466600  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os05g0462700  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os04g0583600  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os03g0119900  histone H4 [Oryza sativa (japonica cultivar-gr...   162   3e-41
Os02g0684500  Similar to Histone H4                               162   3e-41
Os01g0835900  Histone H4 family protein                           162   3e-41
AK058436                                                          162   3e-41
Os05g0462900                                                      132   6e-32
AK062355                                                          103   2e-23

>Os10g0539500 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os09g0553100 Histone H4
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os09g0433600 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os07g0549900 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os05g0466600 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os05g0462700 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os04g0583600 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os03g0119900 histone H4 [Oryza sativa (japonica cultivar-group)]
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os02g0684500 Similar to Histone H4
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os01g0835900 Histone H4 family protein
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>AK058436 
          Length = 103

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT
Sbjct: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           VTAMDVVYALKRQGRTLYGFGG
Sbjct: 82  VTAMDVVYALKRQGRTLYGFGG 103



>Os05g0462900 
          Length = 103

 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 72/82 (87%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           V R  IQGI KP IRRLAR+GGVKRISGLIY+ETRGVL+IFL+NVI DA+TYTEHA RKT
Sbjct: 22  VFRGYIQGIAKPVIRRLARKGGVKRISGLIYKETRGVLEIFLKNVICDAITYTEHAHRKT 81

Query: 82  VTAMDVVYALKRQGRTLYGFGG 103
           V AMDVVYALK QGRT+Y FGG
Sbjct: 82  VMAMDVVYALKLQGRTIYDFGG 103



>AK062355 
          Length = 100

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 66/80 (82%)

Query: 22  VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
           VL+D+ + +TK +IRRLARR GVKRISGL+YEE RGVLK F+E V+RDA  YTE+A+++T
Sbjct: 21  VLKDSARSVTKGSIRRLARRAGVKRISGLLYEEVRGVLKSFVEGVVRDATAYTEYAKKRT 80

Query: 82  VTAMDVVYALKRQGRTLYGF 101
           VT   VV AL+++GR +YG+
Sbjct: 81  VTTGAVVAALRKRGRAIYGY 100



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,393,111
Number of extensions: 71580
Number of successful extensions: 200
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 13
Length of query: 103
Length of database: 17,035,801
Length adjustment: 71
Effective length of query: 32
Effective length of database: 13,328,607
Effective search space: 426515424
Effective search space used: 426515424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)