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Os09g0433600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : histone H4 [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0296) R2 : 0.268
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.03 (0.0984) R2dE : 0.206 R2E : 0.246
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.197 (0.0661) R2dN8 : 0.0215 R2N8 : 0.0615
σ : 0.546
deviance : 137.21
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.2
memory length : 7541
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.95 0.521 10.9 -0.387 0.48 0.978 0.299 -2.76 0.176 14.5 23.5 1416 -- --
124.88 0.52 10.8 0.247 0.454 0.835 0.412 -- 0.276 14.6 19.82 7176 -- --
123.23 0.517 10.9 -0.39 0.498 0.986 -- -2.83 0.175 14.6 23.46 1381 -- --
125.23 0.521 10.8 0.187 0.469 0.916 -- -- 0.249 14.7 18.12 7186 -- --
133.9 0.539 10.9 -0.428 -- 1.03 -- -3.06 0.201 -- 23.77 1714 -- --
147.39 0.569 10.8 0.698 0.413 -- 0.298 -- 0.547 14.5 -- -- -- --
147.69 0.569 10.8 0.706 0.415 -- -- -- 0.549 14.7 -- -- -- --
136.7 0.545 10.8 0.182 -- 0.91 -- -- 0.24 -- 18.2 7538 -- --
125.83 0.522 10.8 -- 0.462 1.04 -- -- 0.219 14.6 17 7190 -- --
157.76 0.587 10.8 0.688 -- -- -- -- 0.538 -- -- -- -- --
160.81 0.593 10.8 -- 0.402 -- -- -- 0.47 14.7 -- -- -- --
137.21 0.546 10.8 -- -- 1.03 -- -- 0.197 -- 17.2 7541 -- --
170.24 0.609 10.8 -- -- -- -- -- 0.462 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.10 radiation 1 14400 < th dose dependent rect. 2 3
3 119.14 temperature 25 1440 > th dose dependent rect. 16 4
8 119.30 humidity 60 720 > th dose dependent rect. 18 1
26 119.93 temperature 25 1440 > th dose dependent rect. 12 9
38 120.32 humidity 70 720 > th dose independent rect. 17 2
44 120.48 radiation 1 14400 < th dose dependent rect. 21 8
53 120.63 temperature 25 1440 > th dose dependent rect. 14 17
56 120.66 temperature 25 1440 > th dose dependent rect. 12 19
89 121.06 humidity 50 720 > th dose dependent rect. 16 4
92 121.08 temperature 25 1440 > th dose dependent sin 16 NA
129 121.62 temperature 25 1440 > th dose dependent rect. 12 1
148 122.13 radiation 1 90 > th dose independent rect. 18 15
149 122.14 radiation 1 90 > th dose independent sin 10 NA
153 122.18 radiation 1 90 < th dose independent sin 10 NA
155 122.20 temperature 25 1440 < th dose independent rect. 16 7
157 122.21 temperature 25 4320 > th dose independent rect. 3 10
167 122.28 temperature 25 1440 > th dose independent rect. 16 6
168 122.29 temperature 25 1440 > th dose independent rect. 15 8
169 122.29 wind 5 43200 > th dose dependent rect. 11 5
178 122.37 temperature 25 4320 < th dose independent rect. 4 8
184 122.40 humidity 90 43200 > th dose dependent rect. 22 2
190 122.45 humidity 90 43200 > th dose independent rect. 22 2
193 122.47 radiation 1 1440 < th dose dependent rect. 22 7
199 122.52 humidity 70 720 > th dose independent rect. 17 10
213 122.61 wind 5 43200 < th dose independent rect. 11 3
216 122.64 radiation 10 43200 < th dose independent rect. 6 1
218 122.65 wind 3 43200 > th dose dependent rect. 11 3
233 122.78 wind 5 43200 > th dose independent rect. 10 5
237 122.78 radiation 40 43200 < th dose dependent rect. 21 8
244 122.82 radiation 20 43200 < th dose independent rect. 17 15
246 122.83 wind 7 43200 < th dose independent rect. 10 7
248 122.83 temperature 20 4320 > th dose dependent rect. 5 1
249 122.85 wind 5 43200 < th dose independent rect. 10 5
256 122.87 wind 5 43200 > th dose independent rect. 11 3
264 122.90 radiation 20 43200 < th dose independent rect. 19 13
269 122.91 radiation 1 720 < th dose dependent rect. 15 4
274 122.92 radiation 20 43200 < th dose independent rect. 24 8
292 122.96 wind 5 43200 < th dose independent rect. 12 1
299 122.98 wind 7 43200 > th dose independent rect. 10 7
303 123.00 radiation 1 90 < th dose dependent sin 10 NA
312 123.09 temperature 25 4320 > th dose independent rect. 10 1
317 123.10 temperature 25 4320 > th dose independent rect. 9 3
321 123.11 atmosphere 1005 43200 > th dose independent rect. 15 1
336 123.13 humidity 80 43200 > th dose independent rect. 13 1
340 123.15 humidity 80 43200 < th dose independent rect. 13 1
346 123.19 radiation 40 43200 < th dose independent rect. 15 20
349 123.20 temperature 30 720 < th dose independent rect. 17 2
361 123.22 radiation 1 720 > th dose independent rect. 12 18
399 123.32 wind 5 14400 > th dose independent rect. 11 1
400 123.32 atmosphere 1005 43200 < th dose independent rect. 13 1
401 123.32 atmosphere 1005 43200 > th dose independent rect. 13 4
415 123.36 temperature 25 4320 < th dose independent rect. 9 2
418 123.36 radiation 40 43200 < th dose dependent rect. 24 5
428 123.38 temperature 30 14400 < th dose independent rect. 14 2
459 123.41 humidity 90 43200 > th dose dependent sin 15 NA
460 123.41 radiation 1 720 < th dose dependent rect. 17 2
484 123.45 radiation 1 90 < th dose independent rect. 19 23
491 123.47 atmosphere 1005 43200 > th dose independent rect. 13 1
497 123.47 humidity 90 43200 > th dose dependent rect. 15 15
506 123.50 radiation 1 14400 > th dose independent rect. 18 1
522 123.51 radiation 40 43200 < th dose independent rect. 7 4
532 123.52 radiation 40 43200 < th dose independent rect. 20 15
539 123.52 humidity 90 43200 > th dose dependent rect. 12 18
558 123.54 temperature 25 1440 > th dose independent rect. 11 12
564 123.55 radiation 40 43200 < th dose independent rect. 10 1
576 123.56 radiation 40 43200 > th dose dependent rect. 10 1
615 123.62 radiation 40 43200 < th dose independent sin 11 NA
622 123.63 temperature 30 14400 > th dose independent rect. 14 2
630 123.64 radiation 1 720 < th dose dependent rect. 14 13
651 123.67 radiation 1 1440 < th dose dependent rect. 18 11
695 123.73 temperature 25 1440 > th dose dependent rect. 2 19
727 123.78 radiation 20 43200 < th dose independent sin 12 NA
749 123.79 wind 9 43200 < th dose dependent rect. 11 1
764 123.80 temperature 25 14400 > th dose dependent rect. 15 3
765 123.80 radiation 20 43200 < th dose dependent rect. 2 3
779 123.82 temperature 25 14400 > th dose dependent rect. 15 1
784 123.83 temperature 25 4320 > th dose independent rect. 3 15
792 123.84 temperature 25 4320 > th dose independent sin 3 NA
793 123.84 temperature 25 1440 < th dose independent rect. 20 2
840 123.88 wind 7 43200 > th dose independent rect. 5 12
904 123.92 radiation 1 43200 > th dose dependent rect. 4 3
917 123.92 radiation 40 43200 > th dose dependent rect. 15 20
941 123.94 radiation 40 43200 > th dose dependent rect. 7 4