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Os04g0583600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : histone H4 [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.53 (0.04) R2 : 0.52
β1 : -1.44 (0.22) R2dD : 0.153 R2D : -0.128
β2 : 1.77 (0.0852) R2dC : 0.466 R2C : 0.411
β3 : 1.09 (0.139) R2dE : 0.0981 R2E : -0.0462
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.83 (0.892) R2dD*E : 0.154 R2D*E : -0.0703
γ1 : -0.109 (0.0889) R2dN8 : 0.00331 R2N8 : -0.0231
σ : 0.622
deviance : 178.47
__
_____
C
peak time of C : 3.76
E
wheather : temperature
threshold : 23.22
memory length : 738
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.14 0.627 9.53 -1.47 1.79 1.12 -0.375 -6.11 -0.113 3.78 23.36 714 -- --
194.95 0.65 9.38 -0.228 1.73 0.567 -0.247 -- 0.228 3.6 23.5 763 -- --
178.47 0.622 9.53 -1.44 1.77 1.09 -- -5.83 -0.109 3.76 23.22 738 -- --
194.92 0.65 9.38 -0.243 1.72 0.55 -- -- 0.246 3.55 24.03 761 -- --
302.63 0.815 9.34 0.0914 -- -1.47 -- -0.76 0.501 -- 23.9 1141 -- --
201.08 0.665 9.38 -0.115 1.68 -- -0.307 -- 0.31 3.1 -- -- -- --
201.39 0.665 9.37 -0.109 1.68 -- -- -- 0.312 3.12 -- -- -- --
302.39 0.813 9.33 0.188 -- -1.52 -- -- 0.527 -- 24.03 761 -- --
196.36 0.653 9.38 -- 1.72 0.505 -- -- 0.261 3.52 23.96 746 -- --
361.55 0.888 9.37 -0.0376 -- -- -- -- 0.356 -- -- -- -- --
201.71 0.664 9.37 -- 1.67 -- -- -- 0.324 3.11 -- -- -- --
303.3 0.814 9.34 -- -- -1.49 -- -- 0.503 -- 24.03 761 -- --
361.59 0.888 9.37 -- -- -- -- -- 0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.69 humidity 80 1440 > th dose dependent rect. 12 1
2 170.95 humidity 80 1440 > th dose independent rect. 12 1
3 171.15 humidity 80 1440 < th dose independent rect. 12 1
4 171.56 humidity 90 270 < th dose independent rect. 8 8
5 171.58 radiation 1 720 < th dose dependent rect. 11 19
7 171.92 temperature 10 270 > th dose dependent rect. 15 8
8 171.94 radiation 1 1440 < th dose independent rect. 11 2
9 171.94 radiation 1 1440 < th dose dependent rect. 11 2
10 171.96 radiation 1 720 > th dose independent rect. 11 8
20 172.13 radiation 1 720 < th dose independent rect. 11 16
21 172.14 radiation 1 1440 > th dose independent rect. 11 2
42 172.81 radiation 1 720 < th dose dependent rect. 11 16
48 173.13 radiation 1 720 < th dose independent rect. 11 19
62 173.49 radiation 1 720 > th dose independent sin 18 NA
63 173.50 radiation 1 720 < th dose independent sin 16 NA
67 173.63 radiation 1 720 < th dose dependent sin 15 NA
72 173.82 temperature 25 270 > th dose independent rect. 16 4
73 173.94 humidity 90 30 < th dose independent rect. 18 15
77 173.98 radiation 30 90 < th dose independent rect. 17 20
85 174.17 radiation 30 270 < th dose independent rect. 15 20
139 175.51 radiation 30 270 < th dose independent rect. 3 8
143 175.60 radiation 30 14400 < th dose independent rect. 17 8
158 175.75 radiation 1 1440 > th dose independent rect. 8 3
159 175.75 humidity 80 14400 < th dose dependent rect. 21 2
179 176.20 radiation 30 4320 < th dose dependent rect. 19 10
184 176.25 radiation 10 1440 < th dose independent rect. 19 10
203 176.68 humidity 90 43200 > th dose dependent rect. 3 1
220 176.83 temperature 15 14400 < th dose dependent rect. 12 17
226 176.90 radiation 1 720 < th dose dependent rect. 11 7
228 176.91 humidity 90 43200 > th dose dependent rect. 20 8
256 177.03 radiation 30 10 < th dose independent rect. 18 18
260 177.04 temperature 15 14400 < th dose dependent sin 15 NA
284 177.14 humidity 80 14400 < th dose dependent rect. 21 11
304 177.19 radiation 40 270 < th dose dependent rect. 16 19
315 177.22 temperature 15 14400 < th dose dependent rect. 21 3
320 177.23 temperature 15 14400 < th dose dependent rect. 19 6
333 177.29 wind 9 14400 > th dose dependent rect. 14 1
365 177.35 temperature 15 270 > th dose independent rect. 16 17
399 177.48 wind 9 14400 > th dose independent rect. 11 4
400 177.48 radiation 1 720 < th dose independent rect. 11 7
418 177.52 temperature 20 270 > th dose dependent rect. 18 1
421 177.53 temperature 20 90 > th dose independent rect. 9 9
427 177.55 temperature 15 270 > th dose independent rect. 9 7
431 177.56 humidity 90 43200 > th dose dependent rect. 23 1
443 177.58 humidity 90 43200 > th dose dependent rect. 14 15
451 177.61 humidity 90 43200 > th dose independent rect. 23 1
458 177.63 temperature 15 270 > th dose independent rect. 15 8
465 177.63 temperature 15 14400 < th dose dependent rect. 21 22
471 177.64 radiation 1 14400 < th dose dependent rect. 9 1
477 177.64 temperature 15 14400 < th dose dependent rect. 18 23
479 177.65 temperature 15 14400 < th dose dependent no NA NA
540 177.74 temperature 15 14400 < th dose dependent rect. 3 1
543 177.74 radiation 40 270 < th dose dependent rect. 3 8
564 177.77 temperature 15 14400 < th dose dependent rect. 1 23
580 177.81 wind 9 14400 > th dose independent rect. 13 2
612 177.86 wind 9 14400 < th dose independent rect. 11 4
684 178.01 temperature 15 14400 > th dose independent rect. 10 4
694 178.03 humidity 90 43200 < th dose independent rect. 17 11
699 178.04 temperature 20 270 > th dose independent rect. 22 17
704 178.05 radiation 1 1440 > th dose independent rect. 4 1
714 178.05 radiation 1 1440 > th dose dependent rect. 4 1
733 178.08 humidity 90 43200 < th dose independent rect. 14 14
735 178.08 humidity 80 14400 < th dose dependent rect. 4 3
740 178.09 humidity 90 43200 > th dose independent rect. 18 10
742 178.10 temperature 20 90 > th dose independent rect. 24 17
748 178.11 humidity 90 43200 < th dose independent rect. 14 16
760 178.13 wind 9 14400 < th dose independent rect. 7 8
761 178.13 humidity 90 43200 > th dose independent rect. 19 8
762 178.13 humidity 90 43200 < th dose independent rect. 18 9
770 178.16 temperature 15 14400 < th dose independent rect. 10 4
814 178.22 humidity 90 43200 > th dose dependent sin 12 NA
825 178.24 humidity 90 43200 > th dose independent rect. 16 13
828 178.24 humidity 90 43200 > th dose independent rect. 14 15
837 178.27 wind 7 14400 > th dose dependent rect. 11 4
846 178.30 wind 9 14400 < th dose independent rect. 13 2
847 178.30 humidity 90 43200 > th dose independent rect. 21 5
856 178.32 temperature 15 14400 < th dose independent rect. 11 2
876 178.35 humidity 90 43200 < th dose independent rect. 20 6
916 178.46 humidity 90 270 < th dose dependent rect. 16 8
925 178.50 humidity 90 43200 < th dose independent sin 14 NA
941 178.54 radiation 40 14400 < th dose dependent rect. 22 7
967 178.60 humidity 50 43200 > th dose independent rect. 18 2
986 178.64 radiation 10 1440 < th dose independent rect. 22 7
998 178.69 humidity 90 43200 > th dose independent sin 13 NA