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Os10g0539500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : histone H4 [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.2 (0.0259) R2 : 0.476
β1 : 0.985 (0.095) R2dD : 0.126 R2D : 0.0741
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.32 (0.0736) R2dE : 0.368 R2E : 0.326
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.33 (0.0555) R2dN8 : 0.0526 R2N8 : -0.00621
σ : 0.485
deviance : 108.45
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 46.1
memory length : 1121
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.12
open length of G : 3.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.89 0.47 15.2 1 1.38 1.46 -1.07 -0.993 0.22 19.2 42.44 78 5.82 7.59
101.59 0.469 15.2 1 1.33 1.4 -0.591 -- 0.229 19.1 40.4 75 5.81 7.72
101.65 0.47 15.2 1.03 1.38 1.46 -- -0.31 0.239 19.3 41.47 90 5.72 7.94
100.1 0.466 15.2 0.951 1.39 1.51 -- -- 0.181 19.8 35.06 92 5.66 9.15
117.62 0.505 15.2 1.19 -- 1.41 -- 0.441 0.281 -- 37.32 1049 5.47 4.98
134.11 0.543 15.2 0.939 0.96 -- -0.069 -- 0.267 16.2 -- -- -- --
134.12 0.542 15.2 0.939 0.96 -- -- -- 0.267 16.2 -- -- -- --
108.45 0.485 15.2 0.985 -- 1.32 -- -- 0.33 -- 46.1 1121 5.12 3.17
125.56 0.522 15.2 -- 1.52 1.57 -- -- 0.0968 20.2 17.64 103 5.45 9.39
183.98 0.634 15.2 0.9 -- -- -- -- 0.241 -- -- -- -- --
157.34 0.587 15.2 -- 0.942 -- -- -- 0.162 16.2 -- -- -- --
133.58 0.538 15.2 -- -- 1.61 -- -- 0.211 -- -5.49 1348 2.33 4.89
205.35 0.669 15.2 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.07 humidity 50.0 90 > th dose dependent rect. 6 7
2 103.21 humidity 50.0 90 > th dose dependent rect. 6 9
5 104.51 temperature 15.0 10 > th dose independent rect. 6 20
7 105.11 precipitation 0.1 270 < th dose independent rect. 3 22
8 105.11 precipitation 0.1 270 < th dose dependent rect. 3 22
12 105.54 wind 1.0 270 > th dose independent rect. 1 2
16 105.99 radiation 40.0 90 < th dose dependent rect. 6 19
17 106.04 humidity 50.0 30 > th dose dependent rect. 6 20
18 106.09 precipitation 0.1 10 < th dose independent rect. 6 20
19 106.09 precipitation 0.1 10 < th dose dependent rect. 6 20
21 106.26 atmosphere 1000.0 270 > th dose independent rect. 1 2
23 106.31 wind 9.0 270 < th dose independent rect. 1 2
25 106.32 temperature 10.0 270 > th dose independent rect. 1 2
27 106.32 temperature 30.0 270 < th dose independent rect. 1 2
28 106.32 humidity 50.0 270 > th dose independent rect. 1 2
32 106.32 atmosphere 1010.0 270 < th dose independent rect. 1 2
34 106.32 radiation 1.0 270 < th dose independent rect. 1 2
39 106.32 temperature 10.0 270 > th dose independent rect. 3 22
40 106.32 radiation 1.0 270 < th dose dependent rect. 1 2
46 106.33 precipitation 0.1 270 < th dose independent rect. 1 2
47 106.33 precipitation 0.1 270 < th dose dependent rect. 1 2
48 106.34 humidity 50.0 10 > th dose independent rect. 6 20
50 106.44 radiation 1.0 90 < th dose independent rect. 1 5
51 106.51 radiation 40.0 90 < th dose dependent rect. 6 7
56 106.65 atmosphere 995.0 270 > th dose dependent rect. 1 2
58 106.75 atmosphere 995.0 10 > th dose dependent rect. 2 4
59 106.77 atmosphere 1000.0 10 > th dose independent rect. 2 4
63 106.89 wind 9.0 270 < th dose independent rect. 3 22
65 107.01 radiation 40.0 10 < th dose dependent rect. 2 4
66 107.05 wind 9.0 10 < th dose independent rect. 2 4
67 107.05 temperature 10.0 10 > th dose independent rect. 2 4
69 107.05 temperature 30.0 10 < th dose independent rect. 2 4
70 107.05 humidity 50.0 10 > th dose independent rect. 2 4
74 107.05 atmosphere 1010.0 10 < th dose independent rect. 2 4
76 107.05 radiation 20.0 10 < th dose independent rect. 2 4
80 107.06 radiation 40.0 90 < th dose independent rect. 6 19
84 107.25 radiation 40.0 90 < th dose independent rect. 6 7
86 107.30 radiation 1.0 90 < th dose dependent rect. 1 5
87 107.31 humidity 50.0 270 > th dose dependent rect. 1 2
93 107.46 wind 9.0 10 < th dose independent rect. 6 20
104 107.68 precipitation 0.1 10 < th dose independent rect. 2 4
105 107.68 precipitation 0.1 10 < th dose dependent rect. 2 4
108 107.71 temperature 10.0 10 > th dose dependent rect. 6 20
109 107.72 radiation 40.0 270 < th dose independent rect. 4 20
112 107.75 radiation 40.0 90 < th dose independent rect. 6 9
128 107.77 humidity 50.0 10 > th dose dependent rect. 2 4
160 108.12 atmosphere 995.0 10 > th dose independent rect. 6 20
165 108.20 wind 9.0 1440 < th dose independent rect. 3 4
166 108.20 temperature 10.0 1440 > th dose independent rect. 3 4
169 108.20 temperature 30.0 1440 < th dose independent rect. 3 4
173 108.20 humidity 50.0 1440 > th dose independent rect. 3 4
178 108.20 atmosphere 995.0 1440 > th dose independent rect. 3 4
179 108.20 radiation 40.0 1440 < th dose independent rect. 3 4
183 108.20 temperature 10.0 1440 > th dose independent rect. 7 20
188 108.27 radiation 20.0 90 < th dose independent rect. 6 19
189 108.28 wind 9.0 270 < th dose dependent rect. 1 2
190 108.28 wind 9.0 10 < th dose dependent rect. 2 4
191 108.31 temperature 30.0 270 < th dose dependent rect. 1 2
198 108.44 radiation 1.0 90 < th dose independent rect. 1 16
203 108.50 radiation 40.0 10 < th dose dependent rect. 14 16
206 108.56 radiation 1.0 90 < th dose dependent sin 3 NA
211 108.63 wind 1.0 270 > th dose independent rect. 24 4
239 108.79 radiation 40.0 270 < th dose dependent rect. 4 20
278 109.06 radiation 1.0 90 < th dose dependent rect. 1 16
314 109.17 radiation 1.0 90 < th dose independent rect. 1 12
317 109.18 radiation 10.0 270 < th dose independent rect. 4 20
365 109.43 humidity 70.0 90 > th dose independent rect. 6 19
374 109.46 temperature 30.0 10 < th dose dependent rect. 2 4
377 109.47 radiation 1.0 90 > th dose independent sin 4 NA
386 109.51 radiation 1.0 90 < th dose independent sin 4 NA
398 109.58 atmosphere 1015.0 10 < th dose independent rect. 6 20
402 109.60 radiation 1.0 90 < th dose dependent rect. 1 12
435 109.75 radiation 1.0 10 > th dose independent rect. 6 10
439 109.78 temperature 10.0 10 > th dose dependent rect. 2 4
443 109.80 humidity 50.0 10 > th dose independent rect. 6 9
466 109.89 wind 1.0 270 > th dose independent rect. 4 20
473 110.00 humidity 50.0 270 > th dose dependent rect. 4 9
475 110.01 temperature 30.0 90 < th dose dependent rect. 1 5
491 110.13 temperature 10.0 270 > th dose dependent rect. 1 2
532 110.35 radiation 40.0 10 < th dose independent rect. 6 20
628 110.57 atmosphere 995.0 270 > th dose independent rect. 3 22
735 110.81 wind 1.0 10 > th dose independent rect. 6 19
745 110.86 radiation 1.0 90 > th dose independent rect. 18 21
792 111.00 radiation 20.0 10 < th dose independent rect. 14 16
862 111.28 temperature 10.0 270 > th dose dependent rect. 17 7
891 111.33 precipitation 0.1 10 < th dose independent rect. 6 9
895 111.33 precipitation 0.1 10 < th dose dependent rect. 6 9
900 111.36 radiation 1.0 90 > th dose independent rect. 5 10
905 111.39 temperature 10.0 10 > th dose independent rect. 6 9
907 111.39 atmosphere 995.0 10 > th dose independent rect. 6 9
908 111.39 atmosphere 1015.0 10 < th dose independent rect. 6 9
909 111.39 temperature 10.0 10 > th dose independent rect. 15 15
931 111.46 wind 1.0 90 > th dose independent rect. 6 19
951 111.54 atmosphere 995.0 10 > th dose dependent rect. 15 15