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Os05g0466600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : histone H4 [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0224) R2 : 0.0188
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.139 (0.0472) R2dN8 : 0.0242 R2N8 : 0.0188
σ : 0.422
deviance : 81.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.66 0.369 10.4 0.219 0.524 0.415 0.373 -0.653 0.184 9.5 26.56 169 -- --
62.67 0.369 10.4 0.214 0.52 0.424 0.62 -- 0.178 9.55 27.13 169 -- --
62.09 0.367 10.4 0.213 0.525 0.424 -- -0.773 0.19 9.52 27.15 169 -- --
64.07 0.373 10.4 0.218 0.515 0.435 -- -- 0.176 9.61 27.12 169 -- --
72.97 0.398 10.4 0.259 -- 0.472 -- -0.896 0.214 -- 26.97 729 -- --
67.35 0.385 10.4 0.213 0.463 -- 0.66 -- 0.16 8.13 -- -- -- --
68.66 0.388 10.4 0.231 0.464 -- -- -- 0.16 8.01 -- -- -- --
72.94 0.398 10.4 0.253 -- 0.419 -- -- 0.216 -- 29 745 -- --
65.52 0.377 10.4 -- 0.503 0.453 -- -- 0.16 9.54 29.61 169 -- --
80.4 0.419 10.4 0.235 -- -- -- -- 0.166 -- -- -- -- --
70.06 0.392 10.4 -- 0.465 -- -- -- 0.134 7.97 -- -- -- --
74.66 0.402 10.4 -- -- 0.428 -- -- 0.195 -- 28.96 745 -- --
81.86 0.422 10.4 -- -- -- -- -- 0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.96 radiation 10 720 < th dose independent rect. 21 10
2 59.88 radiation 20 90 < th dose independent rect. 5 8
3 59.93 radiation 20 90 < th dose independent rect. 6 18
4 60.02 radiation 20 90 < th dose independent rect. 5 10
5 60.13 radiation 20 90 < th dose dependent rect. 6 7
8 60.22 radiation 20 90 < th dose independent rect. 5 21
13 60.39 radiation 10 270 < th dose independent rect. 6 1
18 60.56 radiation 20 10 > th dose dependent rect. 15 21
19 60.59 humidity 60 30 > th dose dependent rect. 6 13
20 60.60 humidity 60 30 > th dose dependent rect. 6 7
22 60.61 radiation 20 10 > th dose dependent rect. 7 5
39 60.67 radiation 10 90 > th dose dependent rect. 15 21
42 60.71 humidity 60 90 > th dose dependent rect. 5 10
44 60.74 radiation 30 90 < th dose dependent rect. 6 18
46 60.75 humidity 50 30 > th dose dependent rect. 6 18
47 60.76 radiation 20 90 < th dose independent rect. 6 5
50 60.81 radiation 20 10 < th dose independent rect. 6 3
72 60.94 humidity 70 30 > th dose independent rect. 6 18
73 60.94 radiation 30 270 < th dose dependent rect. 3 11
74 60.94 radiation 10 270 < th dose dependent rect. 4 11
82 60.98 radiation 40 90 < th dose dependent rect. 5 21
102 61.01 radiation 30 10 > th dose independent rect. 15 21
127 61.03 radiation 40 10 > th dose independent rect. 9 3
170 61.06 humidity 70 720 > th dose dependent rect. 18 1
179 61.08 humidity 50 30 > th dose dependent rect. 6 20
196 61.13 humidity 70 30 > th dose independent rect. 6 3
198 61.13 radiation 10 90 < th dose dependent rect. 6 1
203 61.16 radiation 20 720 < th dose independent rect. 20 15
225 61.18 radiation 30 10 < th dose dependent rect. 6 3
232 61.20 humidity 80 90 > th dose independent rect. 6 9
239 61.21 radiation 20 720 < th dose dependent rect. 21 10
242 61.22 humidity 70 30 > th dose independent rect. 6 20
244 61.23 humidity 80 90 > th dose independent rect. 6 11
251 61.27 humidity 80 90 > th dose independent rect. 6 7
270 61.31 radiation 30 270 < th dose independent rect. 3 21
323 61.36 humidity 60 30 > th dose dependent rect. 6 3
333 61.38 radiation 40 90 > th dose dependent rect. 10 1
358 61.40 humidity 80 90 > th dose independent rect. 6 5
364 61.42 humidity 80 90 < th dose dependent sin 4 NA
369 61.43 radiation 20 90 < th dose independent rect. 3 23
385 61.47 temperature 30 720 < th dose dependent rect. 24 6
391 61.49 radiation 40 10 < th dose dependent rect. 6 20
412 61.53 radiation 20 720 < th dose independent sin 9 NA
530 61.59 radiation 20 90 < th dose independent rect. 6 13
560 61.63 temperature 25 720 < th dose dependent rect. 2 3
629 61.73 temperature 25 720 < th dose dependent rect. 2 1
647 61.76 radiation 20 270 < th dose independent sin 4 NA
650 61.76 humidity 50 90 > th dose dependent sin 3 NA
656 61.77 humidity 90 90 < th dose dependent rect. 7 10
665 61.79 temperature 20 720 > th dose dependent rect. 1 6
667 61.79 humidity 90 90 < th dose dependent rect. 24 17
668 61.79 radiation 40 270 < th dose dependent rect. 3 21
691 61.83 humidity 80 90 < th dose dependent rect. 5 7
699 61.84 radiation 10 1440 < th dose independent rect. 6 1
711 61.85 humidity 90 90 < th dose dependent rect. 2 15
727 61.88 humidity 80 90 < th dose dependent rect. 5 12
770 61.92 temperature 10 720 > th dose dependent rect. 21 11
772 61.92 radiation 20 90 < th dose dependent rect. 6 13
782 61.94 humidity 90 30 < th dose dependent rect. 9 3
816 61.99 radiation 20 90 < th dose independent rect. 21 23
844 62.02 temperature 20 720 > th dose dependent rect. 6 1
859 62.03 wind 5 43200 < th dose dependent rect. 11 1
873 62.05 temperature 20 720 < th dose independent rect. 5 1
885 62.06 radiation 20 90 > th dose dependent sin 7 NA
914 62.07 humidity 80 30 < th dose dependent rect. 13 23
926 62.09 humidity 70 90 > th dose independent rect. 21 22
983 62.12 humidity 70 90 > th dose dependent rect. 6 1
998 62.13 humidity 80 720 > th dose independent rect. 19 1