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Os02g0684500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.86 (0.0469) R2 : 0.561
β1 : 3.27 (0.172) R2dD : 0.371 R2D : 0.336
β2 : 2.24 (0.164) R2dC : 0.387 R2C : -0.0196
β3 : 1.5 (0.155) R2dE : 0.202 R2E : -0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.669 (0.1) R2dN8 : 0.0551 R2N8 : -0.00956
σ : 0.876
deviance : 353.4
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C
peak time of C : 23.5
E
wheather : radiation
threshold : 39.02
memory length : 105
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.8
open length of G : 7.19

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.7 0.863 9.85 3.26 2.12 1.42 -2.82 -2 0.67 23.5 39.02 106 5.93 6.99
346.36 0.867 9.84 3.21 2.15 1.43 -1.54 -- 0.668 23.5 38.46 106 5.85 7.1
354.29 0.877 9.85 3.27 2.12 1.43 -- -0.178 0.657 23.6 38.5 104 5.92 7.07
353.4 0.876 9.86 3.27 2.24 1.5 -- -- 0.669 23.5 39.02 105 5.8 7.19
408.68 0.942 9.81 3.32 -- -0.903 -- 1.39 0.621 -- 74.61 557 6.72 4.68
407.48 0.946 9.83 3.28 1.12 -- -1.7 -- 0.621 0.928 -- -- -- --
419.66 0.959 9.82 3.34 1.12 -- -- -- 0.63 0.92 -- -- -- --
409.16 0.942 9.79 3.37 -- -0.912 -- -- 0.629 -- 163.7 507 9.53 1
640.49 1.18 9.92 -- 2.47 1.53 -- -- 0.403 23.7 49.99 89 5.82 7.42
497.89 1.04 9.8 3.38 -- -- -- -- 0.652 -- -- -- -- --
713.56 1.25 9.91 -- 1.18 -- -- -- 0.258 1.04 -- -- -- --
705.71 1.24 9.93 -- -- -0.993 -- -- 0.258 -- 168.4 1918 9.78 1.38
799.4 1.32 9.89 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.56 radiation 40 90 < th dose independent rect. 6 7
3 343.80 humidity 50 90 > th dose dependent rect. 6 7
4 344.84 radiation 40 90 < th dose dependent rect. 6 7
6 346.08 radiation 40 10 < th dose independent rect. 6 6
20 349.69 humidity 50 90 > th dose dependent rect. 6 9
27 352.96 radiation 40 90 < th dose independent rect. 18 19
34 353.76 radiation 30 43200 > th dose independent rect. 7 1
59 355.78 radiation 40 10 < th dose independent rect. 6 20
63 356.08 wind 1 43200 < th dose independent rect. 20 3
67 356.88 radiation 40 270 < th dose independent rect. 3 22
73 357.28 radiation 40 90 < th dose independent rect. 6 18
74 357.33 radiation 10 43200 < th dose dependent rect. 15 18
76 357.41 wind 1 43200 < th dose dependent rect. 20 4
77 357.45 radiation 10 43200 < th dose dependent sin 12 NA
78 357.49 wind 1 43200 < th dose dependent rect. 22 1
79 357.51 radiation 40 43200 < th dose independent rect. 16 15
84 357.66 radiation 40 90 < th dose independent rect. 6 20
85 357.66 radiation 10 43200 < th dose dependent rect. 15 21
93 357.85 wind 1 43200 < th dose dependent rect. 17 10
94 357.90 radiation 40 43200 < th dose independent rect. 16 3
102 358.04 radiation 30 43200 > th dose independent rect. 15 18
114 358.28 wind 1 43200 < th dose dependent rect. 22 3
118 358.39 humidity 70 43200 > th dose independent rect. 20 14
129 358.58 wind 1 43200 < th dose independent rect. 18 9
130 358.59 wind 1 43200 > th dose independent rect. 19 4
132 358.64 radiation 40 10 < th dose independent rect. 6 18
133 358.64 radiation 40 10 < th dose independent rect. 18 18
153 359.09 radiation 40 90 < th dose dependent rect. 6 20
171 359.37 radiation 10 43200 < th dose dependent rect. 11 21
172 359.38 humidity 70 43200 < th dose independent rect. 21 13
174 359.43 radiation 1 4320 < th dose dependent rect. 19 6
181 359.49 humidity 60 90 > th dose independent rect. 6 7
207 359.61 humidity 50 90 > th dose dependent rect. 6 13
214 359.70 temperature 25 720 > th dose independent rect. 5 5
222 359.77 radiation 10 43200 > th dose independent rect. 16 15
224 359.79 radiation 20 43200 < th dose dependent rect. 16 1
225 359.82 humidity 70 43200 < th dose independent rect. 7 3
229 359.84 radiation 30 43200 < th dose dependent rect. 14 11
230 359.84 radiation 30 43200 < th dose dependent rect. 14 13
235 359.86 radiation 30 43200 < th dose dependent rect. 14 9
236 359.87 humidity 90 270 < th dose independent rect. 8 10
237 359.87 wind 1 43200 < th dose dependent rect. 18 7
238 359.87 radiation 30 43200 < th dose dependent rect. 14 7
258 359.97 temperature 25 720 < th dose independent rect. 3 8
264 360.00 humidity 50 90 > th dose dependent rect. 6 18
290 360.16 humidity 50 30 > th dose dependent rect. 6 20
291 360.17 humidity 70 43200 > th dose independent rect. 6 4
292 360.18 radiation 30 43200 > th dose independent rect. 14 2
309 360.19 radiation 1 43200 > th dose dependent rect. 14 15
313 360.23 radiation 1 43200 > th dose dependent rect. 14 5
334 360.31 radiation 10 43200 < th dose dependent no NA NA
336 360.31 radiation 10 43200 < th dose dependent rect. 4 21
337 360.31 radiation 10 43200 < th dose dependent rect. 24 21
342 360.31 radiation 10 43200 < th dose dependent rect. 22 23
343 360.31 radiation 10 43200 < th dose dependent rect. 24 23
344 360.32 radiation 10 43200 < th dose dependent rect. 4 16
347 360.32 radiation 10 43200 < th dose dependent rect. 2 19
361 360.32 radiation 10 43200 < th dose dependent rect. 20 23
412 360.55 radiation 30 43200 > th dose independent sin 13 NA
460 360.70 radiation 10 43200 > th dose independent rect. 15 17
492 360.88 radiation 10 43200 < th dose independent rect. 15 2
511 360.95 radiation 10 43200 < th dose independent rect. 14 15
517 360.97 humidity 90 43200 > th dose independent rect. 23 1
539 361.04 humidity 60 43200 < th dose dependent sin 12 NA
547 361.08 radiation 10 43200 < th dose independent rect. 14 11
553 361.08 radiation 1 4320 < th dose dependent rect. 19 8
554 361.09 radiation 10 43200 < th dose independent rect. 14 9
557 361.10 radiation 10 43200 < th dose independent rect. 14 6
616 361.39 wind 1 43200 > th dose independent rect. 18 9
619 361.40 radiation 30 4320 < th dose dependent rect. 19 10
623 361.41 radiation 10 43200 < th dose dependent rect. 24 12
627 361.42 radiation 10 43200 < th dose dependent rect. 4 8
628 361.42 radiation 10 43200 < th dose dependent rect. 2 10
631 361.43 humidity 60 43200 < th dose dependent rect. 16 18
641 361.46 humidity 70 43200 < th dose dependent rect. 17 20
648 361.48 humidity 60 43200 < th dose independent rect. 10 9
652 361.49 humidity 60 43200 < th dose independent rect. 9 11
694 361.65 radiation 1 43200 > th dose dependent sin 14 NA
716 361.71 radiation 40 43200 > th dose dependent rect. 13 20
802 361.90 humidity 70 43200 < th dose dependent sin 10 NA
810 361.92 humidity 90 14400 < th dose dependent rect. 3 4
859 362.06 radiation 10 43200 < th dose independent sin 15 NA
952 362.31 wind 9 14400 > th dose dependent rect. 14 1
955 362.32 humidity 80 43200 < th dose dependent rect. 7 3
956 362.33 radiation 40 43200 > th dose dependent rect. 13 3
973 362.34 humidity 60 43200 < th dose independent rect. 16 22