Os01g0835900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone H4 family protein.
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Os01g0835900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone H4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.9 | 0.396 | 10.5 | 0.305 | 1.5 | 0.935 | -0.54 | -0.594 | -0.289 | 16.1 | 25.81 | 1471 | -- | -- |
| 71.11 | 0.393 | 10.4 | 0.468 | 1.47 | 0.923 | -0.464 | -- | -0.251 | 16.1 | 25.9 | 1521 | -- | -- |
| 71.56 | 0.394 | 10.5 | 0.304 | 1.51 | 0.938 | -- | -0.555 | -0.289 | 16.1 | 25.9 | 1459 | -- | -- |
| 71.81 | 0.395 | 10.4 | 0.472 | 1.5 | 0.905 | -- | -- | -0.237 | 16.1 | 26 | 1475 | -- | -- |
| 124.22 | 0.522 | 10.4 | 0.512 | -- | 0.924 | -- | -0.0522 | -0.259 | -- | 25.9 | 1459 | -- | -- |
| 95.98 | 0.459 | 10.4 | 0.796 | 1.47 | -- | -0.604 | -- | 0.0586 | 16.2 | -- | -- | -- | -- |
| 97 | 0.461 | 10.4 | 0.789 | 1.46 | -- | -- | -- | 0.0553 | 16.2 | -- | -- | -- | -- |
| 124.19 | 0.521 | 10.4 | 0.528 | -- | 0.922 | -- | -- | -0.255 | -- | 25.8 | 1780 | -- | -- |
| 77.32 | 0.41 | 10.4 | -- | 1.47 | 1 | -- | -- | -0.253 | 16.1 | 26 | 1519 | -- | -- |
| 212.58 | 0.681 | 10.4 | 0.731 | -- | -- | -- | -- | 0.0164 | -- | -- | -- | -- | -- |
| 113.42 | 0.498 | 10.4 | -- | 1.45 | -- | -- | -- | -0.0326 | 16.2 | -- | -- | -- | -- |
| 131.29 | 0.535 | 10.4 | -- | -- | 0.954 | -- | -- | -0.325 | -- | 26 | 1519 | -- | -- |
| 226.66 | 0.703 | 10.4 | -- | -- | -- | -- | -- | -0.0646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 67.52 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 3 | 67.86 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 18 |
| 5 | 67.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 6 | 68.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 7 | 68.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 14 | 68.74 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 13 |
| 16 | 68.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 19 | 68.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 22 | 69.05 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 23 | 69.05 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 40 | 69.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 80 | 70.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 87 | 70.51 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 131 | 70.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 162 | 71.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 165 | 71.40 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 195 | 71.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 198 | 71.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 209 | 71.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 225 | 71.91 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 21 |
| 227 | 71.92 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 229 | 71.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 243 | 71.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 260 | 72.11 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 19 |
| 265 | 72.13 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 21 |
| 270 | 72.13 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 276 | 72.16 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 294 | 72.23 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 299 | 72.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 313 | 72.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 333 | 72.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 351 | 72.39 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 366 | 72.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 374 | 72.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 380 | 72.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 391 | 72.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 393 | 72.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 394 | 72.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 399 | 72.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 421 | 72.53 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 452 | 72.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 21 |
| 465 | 72.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 475 | 72.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 496 | 72.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 500 | 72.62 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 525 | 72.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 532 | 72.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 541 | 72.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 546 | 72.67 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 11 |
| 551 | 72.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 592 | 72.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 21 |
| 625 | 72.74 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 647 | 72.75 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 684 | 72.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 694 | 72.78 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 772 | 72.84 | temperature | 25 | 4320 | > th | dose independent | sin | 5 | NA |
| 998 | 72.97 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 999 | 72.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |