Os05g0462700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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Os05g0462700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.31 | 0.434 | 10.9 | 0.277 | 0.391 | 1.01 | 0.912 | -0.46 | 0.0238 | 10 | 17.39 | 3565 | -- | -- |
| 85.47 | 0.431 | 10.9 | 0.392 | 0.394 | 1.02 | 0.908 | -- | 0.0504 | 10 | 16.88 | 3574 | -- | -- |
| 88.31 | 0.438 | 10.9 | 0.315 | 0.373 | 0.983 | -- | -0.487 | 0.0233 | 9.37 | 17.33 | 3299 | -- | -- |
| 88.53 | 0.438 | 10.9 | 0.443 | 0.356 | 0.989 | -- | -- | 0.0549 | 9.37 | 16.8 | 3180 | -- | -- |
| 95.51 | 0.455 | 10.9 | 0.351 | -- | 0.946 | -- | -0.372 | 0.0314 | -- | 17.02 | 3053 | -- | -- |
| 106.55 | 0.484 | 10.9 | 0.832 | 0.32 | -- | 0.886 | -- | 0.265 | 9.85 | -- | -- | -- | -- |
| 109.29 | 0.49 | 10.9 | 0.863 | 0.33 | -- | -- | -- | 0.265 | 9.01 | -- | -- | -- | -- |
| 95.68 | 0.456 | 10.9 | 0.456 | -- | 0.953 | -- | -- | 0.063 | -- | 16.48 | 3054 | -- | -- |
| 92.28 | 0.447 | 10.9 | -- | 0.398 | 1.3 | -- | -- | -0.021 | 9.48 | 14.06 | 3518 | -- | -- |
| 115.55 | 0.502 | 10.9 | 0.862 | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
| 128.92 | 0.531 | 10.9 | -- | 0.332 | -- | -- | -- | 0.169 | 8.81 | -- | -- | -- | -- |
| 99.35 | 0.464 | 10.9 | -- | -- | 1.17 | -- | -- | -0.00811 | -- | 16.08 | 4393 | -- | -- |
| 135.17 | 0.543 | 10.9 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 6 | 82.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 10 | 82.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 40 | 83.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 89 | 83.67 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 110 | 83.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 138 | 83.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 191 | 84.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 233 | 84.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 298 | 84.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 318 | 84.27 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 327 | 84.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 407 | 84.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 549 | 84.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 749 | 84.75 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 800 | 84.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 848 | 84.83 | temperature | 25 | 4320 | < th | dose dependent | sin | 10 | NA |