Os07g0549900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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Os07g0549900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.13 | 0.458 | 12.4 | -1.05 | 1.43 | -0.927 | 0.693 | 1.63 | -0.189 | 11.7 | 25.4 | 4629 | -- | -- |
| 96.92 | 0.459 | 12.4 | -0.675 | 1.47 | -0.851 | 0.729 | -- | -0.161 | 11.7 | 24.6 | 4377 | -- | -- |
| 95.23 | 0.455 | 12.4 | -1.12 | 1.41 | -0.965 | -- | 2.03 | -0.14 | 11.5 | 26.7 | 4708 | -- | -- |
| 98.8 | 0.463 | 12.4 | -0.581 | 1.44 | -0.836 | -- | -- | -0.143 | 11.6 | 24.55 | 3256 | -- | -- |
| 178.5 | 0.626 | 12.4 | -0.657 | -- | -0.824 | -- | 0.642 | -0.127 | -- | 26.7 | 4708 | -- | -- |
| 114.39 | 0.501 | 12.3 | -0.306 | 1.4 | -- | 0.694 | -- | 0.0817 | 11.7 | -- | -- | -- | -- |
| 116.46 | 0.505 | 12.3 | -0.279 | 1.4 | -- | -- | -- | 0.0841 | 11.7 | -- | -- | -- | -- |
| 179.67 | 0.627 | 12.4 | -0.529 | -- | -0.798 | -- | -- | -0.0892 | -- | 26.7 | 4708 | -- | -- |
| 106.11 | 0.48 | 12.3 | -- | 1.44 | -0.598 | -- | -- | -0.0765 | 11.6 | 24.5 | 1619 | -- | -- |
| 238.88 | 0.722 | 12.4 | -0.318 | -- | -- | -- | -- | 0.0676 | -- | -- | -- | -- | -- |
| 118.51 | 0.509 | 12.3 | -- | 1.4 | -- | -- | -- | 0.115 | 11.7 | -- | -- | -- | -- |
| 186.91 | 0.639 | 12.4 | -- | -- | -0.759 | -- | -- | -0.0239 | -- | 26.8 | 4651 | -- | -- |
| 241.56 | 0.725 | 12.3 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 12 | 89.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 20 | 89.57 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 13 |
| 46 | 90.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 58 | 90.56 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 67 | 90.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 75 | 90.86 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 77 | 90.87 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 80 | 90.92 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 82 | 90.93 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 182 | 91.99 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 207 | 92.23 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 8 |
| 225 | 92.40 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 13 |
| 262 | 92.76 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 12 |
| 329 | 93.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 336 | 93.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 363 | 93.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 419 | 93.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 429 | 94.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 433 | 94.03 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 475 | 94.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 519 | 94.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 13 |
| 520 | 94.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 13 |
| 570 | 94.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 610 | 94.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 2 |
| 662 | 94.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 677 | 94.96 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 699 | 95.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 718 | 95.07 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 719 | 95.07 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 862 | 95.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 918 | 95.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 975 | 95.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |