Os03g0119900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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Os03g0119900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : histone H4 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.36 | 0.719 | 12 | 1.41 | 1.65 | 1.66 | -2.35 | -2.05 | 0.165 | 1.07 | 50.71 | 56 | 6.08 | 13.5 |
| 241.42 | 0.724 | 12 | 1.42 | 1.63 | 1.69 | -1.36 | -- | 0.16 | 1.05 | 52.42 | 56 | 6.07 | 13.5 |
| 247.88 | 0.733 | 12 | 1.43 | 1.6 | 1.65 | -- | -0.521 | 0.183 | 1.17 | 52.97 | 54 | 6.12 | 13.5 |
| 247.83 | 0.733 | 12 | 1.44 | 1.54 | 1.65 | -- | -- | 0.177 | 1.14 | 55.26 | 55 | 6.04 | 13.5 |
| 324.8 | 0.839 | 11.9 | 1.63 | -- | 1.22 | -- | -0.227 | 0.365 | -- | 72.97 | 55 | 6.1 | 13.6 |
| 312.98 | 0.829 | 12 | 1.34 | 0.808 | -- | -1.17 | -- | 0.307 | 1.33 | -- | -- | -- | -- |
| 318.3 | 0.835 | 12 | 1.38 | 0.815 | -- | -- | -- | 0.312 | 1.63 | -- | -- | -- | -- |
| 324.61 | 0.839 | 11.9 | 1.46 | -- | 1.15 | -- | -- | 0.313 | -- | 72.03 | 63 | 5.93 | 13.5 |
| 303.25 | 0.811 | 12 | -- | 1.53 | 1.6 | -- | -- | 0.0725 | 1.16 | 56 | 53 | 6.1 | 13.5 |
| 358.83 | 0.885 | 11.9 | 1.41 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 368.35 | 0.898 | 12 | -- | 0.84 | -- | -- | -- | 0.158 | 1.69 | -- | -- | -- | -- |
| 381.45 | 0.91 | 12 | -- | -- | 1.06 | -- | -- | 0.176 | -- | 73.07 | 69 | 5.77 | 13.7 |
| 411.34 | 0.947 | 12 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.63 | humidity | 50 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 12 | 247.02 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 10 |
| 24 | 251.15 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 9 |
| 31 | 251.95 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 7 |
| 45 | 253.54 | humidity | 90 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 54 | 254.07 | humidity | 90 | 90 | < th | dose dependent | rect. | 24 | 18 |
| 67 | 254.82 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 79 | 255.81 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 12 |
| 98 | 256.84 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 14 |
| 134 | 258.51 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 7 |
| 159 | 259.57 | humidity | 60 | 90 | > th | dose dependent | sin | 0 | NA |
| 160 | 259.60 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 9 |
| 178 | 260.38 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 22 |
| 185 | 260.58 | humidity | 80 | 90 | > th | dose independent | rect. | 6 | 11 |
| 219 | 261.65 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 18 |
| 233 | 261.98 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 252 | 262.21 | humidity | 90 | 90 | < th | dose dependent | sin | 1 | NA |
| 258 | 262.25 | humidity | 50 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 299 | 263.08 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 346 | 263.80 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 9 |
| 361 | 264.20 | humidity | 70 | 30 | > th | dose independent | rect. | 6 | 18 |
| 403 | 264.86 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 18 |
| 431 | 265.41 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 9 |
| 447 | 265.60 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 448 | 265.61 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 11 |
| 545 | 267.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 550 | 267.12 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 8 |
| 569 | 267.37 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 652 | 268.52 | radiation | 30 | 90 | < th | dose independent | rect. | 17 | 20 |
| 688 | 269.02 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 693 | 269.06 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 14 |
| 720 | 269.25 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 728 | 269.35 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 10 |
| 735 | 269.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 739 | 269.46 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 759 | 269.65 | humidity | 50 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 812 | 270.09 | radiation | 30 | 90 | < th | dose independent | rect. | 17 | 22 |
| 816 | 270.13 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 818 | 270.15 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 8 |
| 854 | 270.65 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 867 | 270.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 873 | 270.81 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 894 | 270.96 | temperature | 10 | 30 | > th | dose dependent | rect. | 8 | 22 |
| 895 | 270.99 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 21 |
| 902 | 271.04 | humidity | 90 | 270 | < th | dose independent | sin | 1 | NA |
| 905 | 271.06 | radiation | 1 | 90 | < th | dose independent | rect. | 20 | 10 |
| 928 | 271.25 | humidity | 60 | 10 | > th | dose independent | rect. | 18 | 15 |
| 938 | 271.36 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 14 |
| 951 | 271.44 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 6 | 14 |
| 965 | 271.57 | humidity | 80 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 986 | 271.76 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 5 |
| 990 | 271.82 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 23 |
| 998 | 271.86 | humidity | 80 | 90 | > th | dose independent | sin | 1 | NA |