BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0438700 Os05g0438700|AK120955
(136 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0155900 Histone H3 235 8e-63
Os06g0160100 Similar to Histone H3.1 (Major histone H3) 235 8e-63
Os06g0160001 Histone H3 235 8e-63
Os06g0159501 Histone H3 235 8e-63
Os05g0438700 Similar to Histone H3.1 (Major histone H3) 235 8e-63
Os04g0419600 Histone H3 235 8e-63
Os01g0866200 Histone H3 235 8e-63
AK108078 235 8e-63
Os06g0130900 Similar to Histone H3.3 232 8e-62
Os03g0390600 Similar to Histone H3.3 232 8e-62
Os02g0457300 202 7e-53
Os06g0159750 Similar to Histone H3 199 7e-52
Os12g0415800 Similar to Histone H3 194 2e-50
Os12g0415400 Similar to Histone H3 186 5e-48
Os02g0457100 182 5e-47
AK062685 123 3e-29
Os05g0489800 Centromeric histone 3 (Histone H3) 112 7e-26
Os04g0450800 Histone H3 family protein 87 4e-18
Y08528 63 6e-11
>Os11g0155900 Histone H3
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os06g0160100 Similar to Histone H3.1 (Major histone H3)
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os06g0160001 Histone H3
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os06g0159501 Histone H3
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os05g0438700 Similar to Histone H3.1 (Major histone H3)
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os04g0419600 Histone H3
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os01g0866200 Histone H3
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>AK108078
Length = 136
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/136 (87%), Positives = 119/136 (87%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os06g0130900 Similar to Histone H3.3
Length = 136
Score = 232 bits (591), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/136 (86%), Positives = 118/136 (86%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os03g0390600 Similar to Histone H3.3
Length = 136
Score = 232 bits (591), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/136 (86%), Positives = 118/136 (86%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>Os02g0457300
Length = 139
Score = 202 bits (514), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Query: 1 MARTKQTARKSTGGKAPRKQLATK---AARKSAPATGGVKKPHRFRPGTVALREIRKYQK 57
MARTKQ RKSTGGKAPRKQL AARKSAP GGVKKPHR+RPGTVALREIRKYQK
Sbjct: 1 MARTKQIVRKSTGGKAPRKQLVAAIHAAARKSAPCIGGVKKPHRYRPGTVALREIRKYQK 60
Query: 58 STELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKR 117
+TELLIRKLPFQRLVREIAQ FK D+RF GLFEDTNLCAIH+KR
Sbjct: 61 NTELLIRKLPFQRLVREIAQLFKHDMRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHSKR 120
Query: 118 VTIMPKDIQLARRIRGER 135
VTIM KD+QLARRIRGER
Sbjct: 121 VTIMSKDVQLARRIRGER 138
>Os06g0159750 Similar to Histone H3
Length = 250
Score = 199 bits (505), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/119 (84%), Positives = 100/119 (84%)
Query: 18 RKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ 77
RKQLATKA KSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ
Sbjct: 132 RKQLATKATCKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ 191
Query: 78 DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
DFKTDLRF GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 192 DFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 250
>Os12g0415800 Similar to Histone H3
Length = 136
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/136 (69%), Positives = 104/136 (76%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTA+KST PRK L K ARKSAP G+KKPHRF+PGTVALREIR YQKSTE
Sbjct: 1 MARTKQTAKKSTASNVPRKLLVMKVARKSAPTMAGLKKPHRFKPGTVALREIRTYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLV+EIAQD ++ +RF GLF+DTNLC IHAKRVTI
Sbjct: 61 LLIRKLPFQRLVQEIAQDVRSYVRFQSSAVVALQEAAETYLVGLFKDTNLCVIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGE+A
Sbjct: 121 MPKDIQLARRIRGEKA 136
>Os12g0415400 Similar to Histone H3
Length = 136
Score = 186 bits (471), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 99/136 (72%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
MARTKQTA+KST G PRK L K ARKSAP G+KKPHRF P VALREIR YQKSTE
Sbjct: 1 MARTKQTAKKSTAGNVPRKLLVMKVARKSAPMMAGLKKPHRFNPWIVALREIRTYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLV+EI QD ++ +RF GLFEDTNLC IHAKRVTI
Sbjct: 61 LLIRKLPFQRLVQEITQDIRSYVRFQSSAMAVLQEAAETYLVGLFEDTNLCVIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLAR I GE+A
Sbjct: 121 MPKDIQLARCIGGEKA 136
>Os02g0457100
Length = 146
Score = 182 bits (463), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 105/145 (72%), Gaps = 10/145 (6%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGV----------KKPHRFRPGTVALR 50
MARTKQTARKSTGGKAPRK L AA AP++ GV KKP R RPGTVALR
Sbjct: 1 MARTKQTARKSTGGKAPRKPLRAIAAVMPAPSSRGVARKSVPFIGVKKPRRHRPGTVALR 60
Query: 51 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNL 110
EIRKYQK+TELLIRKLPFQRLVREIAQ FK D+RF GLFEDTNL
Sbjct: 61 EIRKYQKNTELLIRKLPFQRLVREIAQHFKHDMRFQSHAVLALQEAAEAYLVGLFEDTNL 120
Query: 111 CAIHAKRVTIMPKDIQLARRIRGER 135
CAIH+KRVTIM KD+QLARRIRGER
Sbjct: 121 CAIHSKRVTIMSKDVQLARRIRGER 145
>AK062685
Length = 137
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 19 KQLATKAARKSAPATG--GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA 76
+ L TK +KSA ++G GVK+ HR+RPGTVALR+++ QKSTELLI + PF RLVREIA
Sbjct: 18 RALGTKTGKKSAGSSGASGVKRAHRWRPGTVALRQVKALQKSTELLIARAPFSRLVREIA 77
Query: 77 QDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
+ K LRF L D NL A+HA RVT +P+D+QL RR+RGER
Sbjct: 78 ESHKAGLRFQSSAVAAIQEATEAFVISLLSDANLTALHANRVTALPRDLQLVRRLRGER 136
>Os05g0489800 Centromeric histone 3 (Histone H3)
Length = 164
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFXXXXXXXXXX 95
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTLEALLALQE 122
Query: 96 XXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
+FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 123 AAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
>Os04g0450800 Histone H3 family protein
Length = 73
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 46/66 (69%)
Query: 71 LVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARR 130
L+ IA++ KTDLRF GLFEDTNLCAIHAKRVTIMPKDIQLARR
Sbjct: 8 LLGRIAKNLKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 67
Query: 131 IRGERA 136
IRGERA
Sbjct: 68 IRGERA 73
>Y08528
Length = 85
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 33/36 (91%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGV 36
MAR KQ ARKSTGGKAPRKQLAT AARKSAPATGGV
Sbjct: 25 MARXKQXARKSTGGKAPRKQLATXAARKSAPATGGV 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,685,748
Number of extensions: 115237
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 19
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)