Os06g0160100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H3.1 (Major histone H3).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0160100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Histone H3.1 (Major histone H3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.27 | 0.789 | 5.61 | -2.15 | 0.695 | 2.56 | -0.646 | -6.17 | -0.322 | 5.07 | 21.57 | 1310 | -- | -- |
| 307.46 | 0.817 | 5.4 | -0.401 | 0.69 | 2.29 | -0.859 | -- | 0.152 | 5 | 19.6 | 1304 | -- | -- |
| 282.86 | 0.783 | 5.62 | -2.24 | 0.699 | 2.52 | -- | -6.51 | -0.324 | 4.65 | 21.99 | 1335 | -- | -- |
| 309.22 | 0.819 | 5.4 | -0.398 | 0.692 | 2.28 | -- | -- | 0.155 | 4.68 | 19.5 | 1318 | -- | -- |
| 307.18 | 0.816 | 5.63 | -2.25 | -- | 2.7 | -- | -6.66 | -0.341 | -- | 21.98 | 1283 | -- | -- |
| 455.09 | 1 | 5.28 | 0.415 | 0.913 | -- | -0.422 | -- | 0.671 | 4.07 | -- | -- | -- | -- |
| 455.56 | 1 | 5.28 | 0.42 | 0.909 | -- | -- | -- | 0.674 | 3.98 | -- | -- | -- | -- |
| 333.38 | 0.85 | 5.41 | -0.4 | -- | 2.4 | -- | -- | 0.153 | -- | 19.6 | 1265 | -- | -- |
| 312.77 | 0.824 | 5.38 | -- | 0.7 | 2.15 | -- | -- | 0.226 | 4.71 | 19.81 | 1306 | -- | -- |
| 500.73 | 1.05 | 5.29 | 0.457 | -- | -- | -- | -- | 0.698 | -- | -- | -- | -- | -- |
| 460.21 | 1 | 5.29 | -- | 0.917 | -- | -- | -- | 0.627 | 3.97 | -- | -- | -- | -- |
| 337.06 | 0.855 | 5.39 | -- | -- | 2.26 | -- | -- | 0.221 | -- | 19.88 | 1263 | -- | -- |
| 506.25 | 1.05 | 5.3 | -- | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 274.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 5 | 275.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 21 | 277.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 68 | 280.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 72 | 280.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 83 | 280.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 95 | 281.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 97 | 281.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 14 |
| 115 | 281.91 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 116 | 281.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 16 |
| 122 | 282.06 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 135 | 282.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 151 | 282.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 164 | 283.18 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 184 | 283.72 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 196 | 284.05 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 203 | 284.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 234 | 284.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 237 | 284.96 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 322 | 286.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 330 | 286.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 342 | 287.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 344 | 287.06 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 349 | 287.09 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 355 | 287.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 401 | 287.76 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 408 | 287.87 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 430 | 288.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 443 | 288.36 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 456 | 288.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 460 | 288.55 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 468 | 288.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 470 | 288.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 471 | 288.64 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 474 | 288.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 493 | 288.84 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 500 | 288.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 504 | 288.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 517 | 289.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 522 | 289.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 524 | 289.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 536 | 289.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 543 | 289.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 552 | 289.33 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 582 | 289.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 584 | 289.56 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 607 | 289.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 608 | 289.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 610 | 289.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 625 | 289.89 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 643 | 290.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 649 | 290.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 650 | 290.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 677 | 290.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 695 | 290.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 733 | 290.58 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 737 | 290.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 789 | 290.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 827 | 291.10 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 840 | 291.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 844 | 291.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 845 | 291.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 848 | 291.24 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 893 | 291.51 | temperature | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 912 | 291.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 947 | 291.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 951 | 291.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 975 | 291.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 6 |