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Os06g0130900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H3.3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.1 (0.02) R2 : 0.35
β1 : 1.14 (0.0733) R2dD : 0.359 R2D : 0.31
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0428) R2dN8 : 0.0398 R2N8 : -0.0092
σ : 0.376
deviance : 64.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.38 0.34 16.1 1.23 0.377 0.436 -0.148 -0.272 0.169 18.5 1001 10 -- --
52.43 0.34 16.1 1.21 0.378 0.399 -0.149 -- 0.169 18.5 1001 10 -- --
52.44 0.34 16.1 1.23 0.376 0.437 -- -0.274 0.168 18.5 1001 12 -- --
52.49 0.34 16.1 1.22 0.377 0.4 -- -- 0.169 18.5 1001 10 -- --
59.63 0.36 16.1 1.21 -- 0.439 -- -0.27 0.165 -- 1000 16 -- --
57.56 0.356 16.1 1.15 0.368 -- -0.195 -- 0.203 18.7 -- -- -- --
57.66 0.356 16.1 1.15 0.367 -- -- -- 0.202 18.7 -- -- -- --
59.68 0.36 16.1 1.2 -- 0.406 -- -- 0.162 -- 1000 16 -- --
90.6 0.446 16.1 -- 0.358 0.244 -- -- 0.0493 18.8 1001 17 -- --
64.69 0.376 16.1 1.14 -- -- -- -- 0.195 -- -- -- -- --
92.56 0.45 16.1 -- 0.353 -- -- -- 0.0743 18.9 -- -- -- --
97.06 0.46 16.1 -- -- 0.255 -- -- 0.0435 -- 1000 16 -- --
99.11 0.465 16.1 -- -- -- -- -- 0.0685 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.33 humidity 80 14400 < th dose dependent rect. 4 1
3 50.43 humidity 80 270 > th dose dependent rect. 5 5
7 50.48 wind 9 14400 < th dose independent rect. 13 1
8 50.49 humidity 90 270 > th dose independent rect. 4 6
14 50.55 humidity 80 14400 < th dose dependent rect. 23 6
17 50.58 humidity 90 270 > th dose independent rect. 5 4
36 50.70 wind 9 14400 > th dose independent rect. 13 1
40 50.74 humidity 80 14400 > th dose independent rect. 2 1
48 50.79 humidity 50 90 > th dose dependent rect. 5 8
54 50.85 atmosphere 1000 90 > th dose independent rect. 3 23
68 50.97 humidity 70 90 > th dose dependent rect. 7 4
69 50.98 wind 9 14400 > th dose dependent rect. 13 2
73 51.02 humidity 80 14400 < th dose independent rect. 2 1
75 51.04 humidity 90 270 > th dose independent rect. 4 12
81 51.09 atmosphere 1000 30 > th dose independent rect. 5 21
85 51.14 humidity 80 14400 < th dose independent rect. 2 3
94 51.17 humidity 80 14400 < th dose independent rect. 5 1
99 51.19 humidity 80 14400 > th dose independent rect. 4 1
109 51.22 wind 3 43200 < th dose dependent rect. 20 2
115 51.25 atmosphere 1000 10 > th dose independent rect. 9 23
119 51.28 temperature 20 720 > th dose independent rect. 5 1
143 51.40 temperature 20 720 > th dose dependent rect. 5 2
154 51.45 humidity 80 14400 < th dose independent rect. 21 9
165 51.50 wind 1 43200 < th dose dependent rect. 10 1
169 51.51 temperature 25 270 < th dose independent rect. 20 12
175 51.52 wind 9 14400 > th dose dependent rect. 10 5
177 51.53 wind 9 14400 > th dose dependent rect. 5 10
190 51.58 wind 1 43200 > th dose independent rect. 2 1
199 51.59 wind 9 14400 > th dose dependent rect. 23 16
209 51.62 wind 1 43200 < th dose independent rect. 10 2
216 51.64 radiation 30 90 < th dose independent rect. 5 8
218 51.65 wind 1 43200 > th dose independent rect. 10 2
232 51.70 humidity 80 14400 > th dose independent rect. 21 9
233 51.72 temperature 30 43200 > th dose dependent rect. 8 1
290 51.84 radiation 30 270 < th dose dependent rect. 4 7
292 51.85 wind 9 14400 > th dose independent rect. 5 10
310 51.88 temperature 30 43200 > th dose independent rect. 8 1
328 51.89 wind 9 14400 > th dose independent rect. 10 5
342 51.90 wind 9 14400 > th dose independent rect. 23 17
349 51.91 radiation 30 90 < th dose independent rect. 7 18
361 51.93 atmosphere 1000 30 > th dose independent rect. 13 23
365 51.94 temperature 20 1440 < th dose independent rect. 4 1
371 51.95 radiation 20 90 < th dose independent rect. 7 4
387 51.97 wind 9 14400 < th dose independent rect. 5 11
395 51.98 temperature 30 43200 < th dose independent rect. 6 3
398 51.98 radiation 40 90 < th dose independent rect. 5 21
406 51.99 temperature 30 43200 < th dose independent rect. 8 1
421 52.00 wind 1 43200 < th dose independent rect. 20 6
425 52.00 temperature 25 270 > th dose independent rect. 22 9
439 52.01 temperature 30 43200 < th dose independent rect. 21 12
440 52.01 wind 9 14400 < th dose independent rect. 2 14
446 52.02 radiation 40 43200 > th dose independent rect. 13 1
459 52.03 temperature 30 43200 < th dose independent rect. 24 9
467 52.04 wind 1 43200 < th dose independent rect. 2 1
470 52.04 wind 9 14400 < th dose independent rect. 10 6
477 52.04 radiation 40 90 < th dose dependent rect. 6 7
484 52.05 wind 9 14400 < th dose independent rect. 24 16
495 52.06 temperature 30 43200 < th dose independent rect. 2 7
538 52.12 wind 9 14400 > th dose dependent rect. 19 20
568 52.18 humidity 70 30 > th dose independent rect. 7 6
583 52.21 wind 1 43200 < th dose dependent rect. 18 8
597 52.23 wind 9 14400 > th dose independent rect. 19 21
602 52.23 wind 1 43200 < th dose dependent rect. 16 10
610 52.25 temperature 25 43200 > th dose independent rect. 21 1
634 52.29 wind 1 43200 > th dose independent rect. 20 6
647 52.31 wind 9 14400 > th dose independent rect. 15 1
648 52.31 temperature 25 43200 < th dose independent rect. 21 1
659 52.33 temperature 25 270 < th dose independent rect. 5 2
668 52.34 humidity 50 90 > th dose dependent rect. 6 19
669 52.35 wind 1 43200 < th dose independent rect. 20 2
694 52.37 radiation 20 10 > th dose dependent rect. 13 23
700 52.38 humidity 90 270 < th dose independent rect. 24 16
707 52.39 humidity 80 90 > th dose independent rect. 7 4
714 52.40 radiation 40 43200 < th dose independent rect. 13 1
730 52.41 wind 1 43200 < th dose dependent rect. 23 2
735 52.42 wind 9 14400 < th dose independent rect. 15 1
741 52.42 radiation 1 270 < th dose independent rect. 5 5
799 52.46 radiation 40 90 > th dose dependent rect. 10 1
803 52.47 wind 1 43200 < th dose independent rect. 19 4
807 52.47 radiation 10 43200 > th dose independent rect. 17 14
808 52.47 radiation 40 10 < th dose independent rect. 7 19
822 52.49 radiation 30 90 < th dose dependent rect. 7 4
824 52.49 humidity 50 10 > th dose dependent rect. 7 19
825 52.50 wind 9 14400 > th dose independent sin 3 NA
826 52.50 wind 1 43200 > th dose independent rect. 19 3
866 52.52 temperature 30 10 < th dose independent rect. 9 23
867 52.52 radiation 30 43200 > th dose dependent rect. 13 1
885 52.54 radiation 40 43200 > th dose independent sin 14 NA
893 52.54 atmosphere 1000 90 > th dose independent rect. 5 16
907 52.56 wind 9 14400 > th dose dependent sin 3 NA
918 52.57 atmosphere 1000 10 > th dose independent rect. 7 19
922 52.57 atmosphere 1000 30 > th dose independent rect. 23 23
932 52.58 radiation 20 43200 > th dose independent rect. 13 3
949 52.60 temperature 25 1440 < th dose independent rect. 24 2
970 52.62 humidity 90 270 > th dose independent sin 2 NA
981 52.62 atmosphere 1000 90 > th dose independent rect. 11 23
983 52.63 temperature 25 1440 > th dose independent rect. 23 3
985 52.63 radiation 40 10 > th dose independent rect. 13 23