Os05g0489800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Centromeric histone 3 (Histone H3).
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Os05g0489800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Centromeric histone 3 (Histone H3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.07 | 0.495 | 6.19 | -0.271 | 2.2 | 1.51 | 0.635 | -3.05 | 0.375 | 18.6 | 24.34 | 23 | -- | -- |
| 115.23 | 0.5 | 6.15 | 0.0937 | 2.22 | 1.24 | 0.418 | -- | 0.464 | 18.5 | 23.64 | 22 | -- | -- |
| 111.81 | 0.492 | 6.18 | -0.251 | 2.2 | 1.48 | -- | -2.56 | 0.37 | 18.6 | 23.82 | 22 | -- | -- |
| 115.65 | 0.501 | 6.14 | 0.0898 | 2.22 | 1.24 | -- | -- | 0.468 | 18.5 | 23.7 | 22 | -- | -- |
| 247.83 | 0.733 | 6.21 | -0.852 | -- | 3.08 | -- | -4.3 | 0.0745 | -- | 24.22 | 340 | -- | -- |
| 138.74 | 0.552 | 6.11 | 0.313 | 2.55 | -- | 0.533 | -- | 0.632 | 17.9 | -- | -- | -- | -- |
| 139.43 | 0.553 | 6.11 | 0.309 | 2.56 | -- | -- | -- | 0.634 | 17.9 | -- | -- | -- | -- |
| 259.44 | 0.75 | 6.13 | -0.225 | -- | 2.76 | -- | -- | 0.308 | -- | 24.29 | 327 | -- | -- |
| 115.85 | 0.501 | 6.15 | -- | 2.22 | 1.27 | -- | -- | 0.456 | 18.5 | 23.64 | 22 | -- | -- |
| 478.34 | 1.02 | 6.07 | 0.232 | -- | -- | -- | -- | 0.575 | -- | -- | -- | -- | -- |
| 141.94 | 0.557 | 6.12 | -- | 2.55 | -- | -- | -- | 0.6 | 17.9 | -- | -- | -- | -- |
| 260.71 | 0.752 | 6.12 | -- | -- | 2.72 | -- | -- | 0.337 | -- | 24.3 | 335 | -- | -- |
| 479.76 | 1.02 | 6.07 | -- | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.92 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 3 | 107.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 23 | 108.89 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 25 | 109.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 30 | 109.34 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 38 | 109.63 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 40 | 109.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 46 | 109.90 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 51 | 110.17 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 59 | 110.41 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 67 | 110.55 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 73 | 110.71 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 81 | 110.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 83 | 110.88 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 124 | 111.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 153 | 111.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 206 | 111.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 274 | 112.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 285 | 112.17 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 305 | 112.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 329 | 112.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 337 | 112.38 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 340 | 112.39 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 402 | 112.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 457 | 112.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 463 | 112.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 530 | 113.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 536 | 113.10 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 547 | 113.15 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 556 | 113.20 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 597 | 113.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 11 |
| 616 | 113.41 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 619 | 113.42 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 635 | 113.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 642 | 113.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 646 | 113.52 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 702 | 113.72 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 709 | 113.73 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 726 | 113.76 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 737 | 113.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 745 | 113.80 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 755 | 113.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 757 | 113.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 758 | 113.84 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 760 | 113.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 767 | 113.86 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 768 | 113.86 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 774 | 113.87 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 792 | 113.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 795 | 113.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 816 | 113.91 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 827 | 113.93 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 869 | 114.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 870 | 114.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 887 | 114.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 895 | 114.10 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 12 |
| 922 | 114.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 941 | 114.19 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 954 | 114.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 956 | 114.20 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 986 | 114.22 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |