BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0489800 Os05g0489800|AY438639
(164 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0489800 Centromeric histone 3 (Histone H3) 254 1e-68
Os11g0155900 Histone H3 119 1e-27
Os06g0160100 Similar to Histone H3.1 (Major histone H3) 119 1e-27
Os06g0160001 Histone H3 119 1e-27
Os06g0159501 Histone H3 119 1e-27
Os05g0438700 Similar to Histone H3.1 (Major histone H3) 119 1e-27
Os04g0419600 Histone H3 119 1e-27
Os01g0866200 Histone H3 119 1e-27
AK108078 119 1e-27
Os02g0457300 117 5e-27
Os06g0130900 Similar to Histone H3.3 117 5e-27
Os03g0390600 Similar to Histone H3.3 117 5e-27
Os06g0159750 Similar to Histone H3 115 1e-26
Os02g0457100 110 5e-25
Os12g0415800 Similar to Histone H3 104 2e-23
Os12g0415400 Similar to Histone H3 102 1e-22
AK062685 89 2e-18
>Os05g0489800 Centromeric histone 3 (Histone H3)
Length = 164
Score = 254 bits (650), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/164 (78%), Positives = 129/164 (78%)
Query: 1 MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQXXXXXXXXXXXXXXXXXXXXXXXPRQQT 60
MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQ PRQQT
Sbjct: 1 MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATTRSAAGTSASGTPRQQT 60
Query: 61 KQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXX 120
KQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWT
Sbjct: 61 KQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTLEALLAL 120
Query: 121 XXXXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRRPW 164
YHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRRPW
Sbjct: 121 QEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRRPW 164
>Os11g0155900 Histone H3
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os06g0160100 Similar to Histone H3.1 (Major histone H3)
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os06g0160001 Histone H3
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os06g0159501 Histone H3
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os05g0438700 Similar to Histone H3.1 (Major histone H3)
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os04g0419600 Histone H3
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os01g0866200 Histone H3
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>AK108078
Length = 136
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os02g0457300
Length = 139
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHR+RPGTVALREIRK+QK TELLI PF RLVREI + D+ R+
Sbjct: 40 KKPHRYRPGTVALREIRKYQKNTELLIRKLPFQRLVREIAQLFKHDM-RFQSHAVLALQE 98
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIH+KRVTIM KD+QLARRI G R
Sbjct: 99 AAEAYLVGLFEDTNLCAIHSKRVTIMSKDVQLARRIRGER 138
>Os06g0130900 Similar to Histone H3.3
Length = 136
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHR+RPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSHAVLALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os03g0390600 Similar to Histone H3.3
Length = 136
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHR+RPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 37 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSHAVLALQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 96 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
>Os06g0159750 Similar to Histone H3
Length = 250
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRFRPGTVALREIRK+QK+TELLI PF RLVREI + D+ R+
Sbjct: 151 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSSAVAALQE 209
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIHAKRVTIM KD+QLARRI G R
Sbjct: 210 AAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 249
>Os02g0457100
Length = 146
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KP R RPGTVALREIRK+QK TELLI PF RLVREI + D+ R+
Sbjct: 47 KKPRRHRPGTVALREIRKYQKNTELLIRKLPFQRLVREIAQHFKHDM-RFQSHAVLALQE 105
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLCAIH+KRVTIM KD+QLARRI G R
Sbjct: 106 AAEAYLVGLFEDTNLCAIHSKRVTIMSKDVQLARRIRGER 145
>Os12g0415800 Similar to Histone H3
Length = 136
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 70/103 (67%), Gaps = 7/103 (6%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDV---SRWTXXXXXX 119
+KPHRF+PGTVALREIR +QK+TELLI PF RLV+EI ++DV R+
Sbjct: 37 KKPHRFKPGTVALREIRTYQKSTELLIRKLPFQRLVQEI----AQDVRSYVRFQSSAVVA 92
Query: 120 XXXXXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +F+ +NLC IHAKRVTIM KD+QLARRI G +
Sbjct: 93 LQEAAETYLVGLFKDTNLCVIHAKRVTIMPKDIQLARRIRGEK 135
>Os12g0415400 Similar to Histone H3
Length = 136
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
+KPHRF P VALREIR +QK+TELLI PF RLV+EIT V R+
Sbjct: 37 KKPHRFNPWIVALREIRTYQKSTELLIRKLPFQRLVQEITQDIRSYV-RFQSSAMAVLQE 95
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
+LV +FE +NLC IHAKRVTIM KD+QLAR IGG +
Sbjct: 96 AAETYLVGLFEDTNLCVIHAKRVTIMPKDIQLARCIGGEK 135
>AK062685
Length = 137
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 63 RKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREITDFYSKDVSRWTXXXXXXXXX 122
++ HR+RPGTVALR+++ QK+TELLI APFSRLVREI + + + R+
Sbjct: 38 KRAHRWRPGTVALRQVKALQKSTELLIARAPFSRLVREIAESHKAGL-RFQSSAVAAIQE 96
Query: 123 XXXYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRR 162
++ + +NL A+HA RVT + +D+QL RR+ G R
Sbjct: 97 ATEAFVISLLSDANLTALHANRVTALPRDLQLVRRLRGER 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,045,714
Number of extensions: 106778
Number of successful extensions: 345
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 17
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)