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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0438700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H3.1 (Major histone H3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0378) R2 : 0.274
β1 : -0.703 (0.138) R2dD : 0.0436 R2D : 0.0145
β2 : 1.34 (0.13) R2dC : 0.35 R2C : -0.111
β3 : -1.11 (0.121) R2dE : 0.277 R2E : -0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.509 (0.0804) R2dN8 : 0.0862 R2N8 : 0.0615
σ : 0.7
deviance : 226.05
__
_____
C
peak time of C : 10.1
E
wheather : humidity
threshold : 89.87
memory length : 294
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 14.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.35 0.681 3.06 -0.599 1.36 -1.11 -2.69 2.21 0.505 10 90 283 0.0334 14.2
221.58 0.693 3.04 -0.655 1.32 -1.08 -1.1 -- 0.503 9.93 89.66 287 0.0167 14.2
227.92 0.703 3.05 -0.585 1.11 -0.928 -- 0.781 0.568 9.9 89.78 279 0.0166 14.8
226.05 0.7 3.04 -0.703 1.34 -1.11 -- -- 0.509 10.1 89.87 294 0.0167 14.1
235.55 0.715 3.1 -0.656 -- -1.59 -- 1.7 0.472 -- 90 938 0.431 15.2
251.96 0.744 3.08 -0.581 0.699 -- -1.23 -- 0.415 7.46 -- -- -- --
256.07 0.749 3.08 -0.61 0.7 -- -- -- 0.417 7.31 -- -- -- --
241.51 0.724 3.09 -0.741 -- -1.41 -- -- 0.454 -- 89 949 0.0166 15.2
239.16 0.72 3.03 -- 1.34 -1.07 -- -- 0.556 10.1 90 283 0.267 14
282.11 0.785 3.09 -0.598 -- -- -- -- 0.429 -- -- -- -- --
265.88 0.763 3.06 -- 0.695 -- -- -- 0.485 7.37 -- -- -- --
255.24 0.744 3.08 -- -- -1.23 -- -- 0.539 -- 89.22 961 1.13 13.9
291.55 0.797 3.08 -- -- -- -- -- 0.495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.24 humidity 90 270 < th dose independent rect. 24 14
6 214.21 humidity 90 270 < th dose independent rect. 7 8
13 216.56 humidity 80 270 > th dose dependent rect. 3 9
15 216.86 humidity 80 43200 > th dose independent rect. 3 13
16 216.93 humidity 90 270 < th dose independent sin 3 NA
17 216.93 humidity 90 43200 < th dose independent rect. 14 1
22 217.39 humidity 80 43200 > th dose independent rect. 2 15
28 217.98 humidity 80 43200 < th dose independent rect. 3 13
31 218.32 humidity 80 43200 > th dose independent rect. 4 11
32 218.40 humidity 80 43200 < th dose independent rect. 2 15
33 218.40 humidity 80 270 > th dose dependent rect. 3 14
34 218.41 humidity 90 270 > th dose independent rect. 1 17
36 218.46 humidity 80 270 > th dose dependent sin 3 NA
45 218.75 humidity 90 270 > th dose independent sin 2 NA
49 218.87 humidity 70 43200 > th dose dependent rect. 2 14
51 218.94 humidity 90 10 < th dose independent rect. 9 7
53 218.95 humidity 70 43200 > th dose dependent rect. 1 16
61 219.18 humidity 90 270 > th dose independent rect. 1 11
62 219.21 humidity 90 270 > th dose independent rect. 1 13
68 219.41 temperature 15 270 > th dose independent rect. 7 8
97 219.98 temperature 15 90 > th dose independent rect. 9 8
122 220.35 humidity 80 43200 > th dose independent sin 2 NA
137 220.70 humidity 90 270 < th dose independent rect. 9 3
169 221.32 humidity 70 43200 > th dose dependent sin 3 NA
188 221.84 temperature 20 90 < th dose dependent rect. 5 6
192 221.86 humidity 80 43200 > th dose dependent rect. 12 17
196 222.00 humidity 80 43200 < th dose independent sin 2 NA
201 222.12 radiation 30 10 < th dose independent rect. 5 7
203 222.13 humidity 90 43200 > th dose independent rect. 14 1
207 222.19 humidity 60 10 > th dose dependent rect. 5 8
216 222.33 radiation 30 10 < th dose independent rect. 5 15
224 222.51 temperature 15 270 > th dose independent rect. 23 14
243 222.72 temperature 20 90 < th dose dependent rect. 4 16
256 222.83 humidity 50 10 > th dose dependent rect. 5 15
337 223.63 humidity 80 43200 > th dose dependent rect. 14 1
353 223.74 humidity 70 10 > th dose independent rect. 5 7
354 223.74 radiation 40 10 < th dose dependent rect. 5 7
436 224.41 temperature 25 30 > th dose independent rect. 6 3
437 224.42 humidity 80 43200 > th dose dependent sin 15 NA
533 225.01 wind 7 10 < th dose independent rect. 9 7
534 225.01 humidity 90 43200 < th dose independent rect. 13 16
565 225.18 radiation 20 10 < th dose independent rect. 5 5
577 225.24 temperature 20 10 < th dose dependent rect. 5 7
594 225.30 humidity 90 270 < th dose dependent rect. 23 15
622 225.43 humidity 90 270 < th dose independent rect. 7 22
632 225.47 temperature 15 90 > th dose independent rect. 9 19
642 225.49 temperature 20 90 < th dose dependent sin 2 NA
644 225.50 humidity 90 270 < th dose independent rect. 8 19
655 225.55 humidity 90 270 < th dose independent rect. 23 22
681 225.65 humidity 80 43200 > th dose dependent sin 6 NA
684 225.66 humidity 90 43200 > th dose independent rect. 13 16
688 225.67 humidity 70 10 > th dose independent rect. 5 15
699 225.72 wind 7 90 < th dose independent rect. 9 8
765 225.90 temperature 15 43200 < th dose dependent rect. 22 2
768 225.92 temperature 15 270 > th dose independent rect. 9 4
788 226.00 temperature 20 270 < th dose dependent rect. 1 12
824 226.09 atmosphere 1015 720 < th dose independent rect. 24 8
863 226.20 temperature 25 10 > th dose dependent rect. 18 15
875 226.24 temperature 25 10 > th dose dependent rect. 23 10
900 226.33 humidity 80 43200 > th dose dependent no NA NA
917 226.38 temperature 20 270 > th dose dependent rect. 6 1
924 226.40 wind 7 10 < th dose independent rect. 9 20
930 226.42 humidity 90 43200 < th dose independent rect. 21 7
968 226.60 humidity 70 43200 > th dose dependent sin 18 NA
978 226.65 temperature 25 10 > th dose dependent sin 10 NA