Os04g0419600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone H3.
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Os04g0419600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone H3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.73 | 0.762 | 7.12 | -3.84 | 3.11 | 1.94 | 0.973 | -5.49 | -0.195 | 5.92 | 25.19 | 1221 | -- | -- |
| 270.16 | 0.766 | 7.02 | -2.59 | 3.31 | 1.57 | 1.42 | -- | -0.0793 | 5.74 | 21.39 | 1958 | -- | -- |
| 264.9 | 0.758 | 7.13 | -3.85 | 3.12 | 1.95 | -- | -5.68 | -0.183 | 5.95 | 25.4 | 1206 | -- | -- |
| 273.29 | 0.77 | 7 | -2.56 | 3.35 | 1.56 | -- | -- | -0.0509 | 5.8 | 21.6 | 1972 | -- | -- |
| 754.01 | 1.28 | 7.22 | -4.04 | -- | 2.33 | -- | -5.69 | -0.296 | -- | 24.29 | 1285 | -- | -- |
| 340.41 | 0.865 | 6.92 | -2.03 | 3.19 | -- | 1.23 | -- | 0.293 | 5.6 | -- | -- | -- | -- |
| 344.08 | 0.869 | 6.93 | -2.03 | 3.2 | -- | -- | -- | 0.288 | 5.63 | -- | -- | -- | -- |
| 756.85 | 1.28 | 7.04 | -2.51 | -- | 1.79 | -- | -- | 0.068 | -- | 23.69 | 1283 | -- | -- |
| 428.42 | 0.964 | 6.89 | -- | 3.26 | 0.857 | -- | -- | 0.433 | 5.76 | 24.49 | 1975 | -- | -- |
| 874.73 | 1.38 | 6.97 | -1.92 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 452.42 | 0.995 | 6.88 | -- | 3.16 | -- | -- | -- | 0.514 | 5.66 | -- | -- | -- | -- |
| 877.72 | 1.38 | 6.89 | -- | -- | -1.93 | -- | -- | 0.728 | -- | 24.49 | 1975 | -- | -- |
| 972.44 | 1.46 | 6.93 | -- | -- | -- | -- | -- | 0.579 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.59 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 2 | 257.25 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 5 | 257.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 10 | 260.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 16 | 262.34 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 20 | 262.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 33 | 263.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 44 | 264.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 45 | 264.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 54 | 265.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 59 | 265.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 75 | 265.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 85 | 265.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 88 | 265.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 191 | 266.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 203 | 266.97 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 212 | 267.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 230 | 267.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 239 | 267.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 15 |
| 268 | 267.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 300 | 267.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 321 | 267.94 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 333 | 267.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 351 | 268.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 353 | 268.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 384 | 268.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 388 | 268.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 403 | 268.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 425 | 268.31 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 543 | 268.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 603 | 269.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 665 | 269.67 | temperature | 10 | 270 | > th | dose dependent | sin | 15 | NA |
| 692 | 269.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 739 | 270.11 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 806 | 270.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 847 | 270.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 925 | 271.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 928 | 271.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 957 | 271.37 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 12 |