Os01g0866200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone H3.
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Os01g0866200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone H3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.53 | 0.669 | 11.8 | 0.878 | 0.756 | -2.97 | -0.418 | -0.397 | 0.00118 | 4.39 | 19.69 | 278 | 19.9 | 21.1 |
| 202.6 | 0.663 | 11.8 | 0.922 | 0.757 | -3.01 | -0.293 | -- | 0.0175 | 4.36 | 19.6 | 284 | 19.8 | 21.1 |
| 202.85 | 0.663 | 11.8 | 0.909 | 0.784 | -2.97 | -- | -0.149 | 0.00712 | 4.47 | 19.55 | 281 | 19.9 | 21.1 |
| 202.77 | 0.663 | 11.8 | 0.947 | 0.785 | -3.01 | -- | -- | 0.02 | 4.57 | 19.58 | 284 | 19.9 | 20.9 |
| 220.88 | 0.692 | 11.7 | 1.15 | -- | -3.42 | -- | 0.531 | 0.136 | -- | 20.24 | 206 | 19.5 | 22.5 |
| 335.42 | 0.859 | 11.9 | 0.329 | 1.6 | -- | 0.146 | -- | -0.448 | 3.66 | -- | -- | -- | -- |
| 335.49 | 0.858 | 11.9 | 0.327 | 1.6 | -- | -- | -- | -0.449 | 3.65 | -- | -- | -- | -- |
| 221 | 0.692 | 11.8 | 1.08 | -- | -3.39 | -- | -- | 0.112 | -- | 20.02 | 203 | 19.4 | 22.6 |
| 224.35 | 0.698 | 11.8 | -- | 0.89 | -2.7 | -- | -- | -0.122 | 4.5 | 20.1 | 282 | 20 | 20.7 |
| 476.91 | 1.02 | 11.9 | 0.394 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 338.31 | 0.86 | 11.9 | -- | 1.6 | -- | -- | -- | -0.485 | 3.65 | -- | -- | -- | -- |
| 246 | 0.731 | 11.8 | -- | -- | -3.23 | -- | -- | -0.112 | -- | 23.25 | 216 | 19.3 | 21.7 |
| 481 | 1.02 | 11.9 | -- | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 3 | 204.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 4 | 205.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 22 | 210.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 77 | 216.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 90 | 217.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 183 | 224.24 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 185 | 224.29 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 202 | 225.17 | temperature | 15 | 90 | > th | dose dependent | sin | 22 | NA |
| 217 | 225.88 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 244 | 226.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 246 | 227.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 285 | 228.15 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 354 | 230.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 442 | 233.04 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 20 |
| 554 | 235.54 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 18 |
| 775 | 239.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 797 | 239.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 848 | 240.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 979 | 242.21 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 21 |