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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0415800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0361) R2 : 0.562
β1 : 2.45 (0.135) R2dD : 0.358 R2D : 0.167
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.03 (0.16) R2dE : 0.433 R2E : 0.213
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.273 (0.0828) R2dN8 : 0.0169 R2N8 : -0.0674
σ : 0.66
deviance : 200.52
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.42
memory length : 347
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.04 0.636 3.95 2.04 0.236 3.09 1.68 1.93 0.189 9.6 26.54 321 -- --
187.42 0.638 3.91 2.35 0.217 2.96 1.72 -- 0.25 9.34 26.98 320 -- --
193.31 0.648 3.94 2.08 0.21 3.11 -- 2.08 0.194 9.05 26.57 334 -- --
198.41 0.656 3.91 2.44 0.225 3 -- -- 0.268 10.6 27.39 311 -- --
194.92 0.65 3.95 2.05 -- 3.14 -- 2.2 0.188 -- 26.92 364 -- --
318.04 0.836 4.04 1.64 0.767 -- 1.81 -- -0.388 6.68 -- -- -- --
325 0.844 4.05 1.66 0.793 -- -- -- -0.396 5.97 -- -- -- --
200.52 0.66 3.91 2.45 -- 3.03 -- -- 0.273 -- 27.42 347 -- --
340.15 0.859 4.01 -- 0.243 2.14 -- -- -0.194 10.5 28.87 274 -- --
357.57 0.884 4.06 1.68 -- -- -- -- -0.378 -- -- -- -- --
397.61 0.933 4.09 -- 0.818 -- -- -- -0.581 5.87 -- -- -- --
343.46 0.863 4.01 -- -- 2.16 -- -- -0.174 -- 28.65 327 -- --
432.31 0.97 4.1 -- -- -- -- -- -0.565 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.48 temperature 25 270 < th dose dependent rect. 3 23
2 187.53 temperature 30 270 < th dose dependent rect. 14 21
3 187.68 temperature 25 270 < th dose dependent rect. 11 23
4 187.81 temperature 25 270 < th dose dependent rect. 13 23
8 187.94 temperature 25 270 < th dose dependent rect. 20 23
11 188.15 temperature 25 270 < th dose dependent no NA NA
12 188.29 temperature 25 270 < th dose dependent rect. 24 23
17 188.63 temperature 25 270 < th dose dependent rect. 17 23
98 195.25 temperature 15 270 > th dose dependent rect. 17 23
136 198.09 temperature 15 270 > th dose dependent sin 8 NA
183 202.07 temperature 30 270 < th dose dependent sin 8 NA
226 205.05 temperature 15 90 > th dose dependent rect. 7 23
231 205.40 temperature 25 720 < th dose dependent rect. 6 19
297 208.61 temperature 30 30 < th dose dependent rect. 9 23
304 208.83 temperature 15 270 > th dose dependent no NA NA
357 210.84 temperature 25 1440 < th dose dependent rect. 17 19
362 210.94 temperature 15 10 > th dose dependent rect. 8 23
378 211.18 temperature 30 720 < th dose dependent sin 12 NA
381 211.24 temperature 10 720 > th dose dependent rect. 17 18
473 212.61 temperature 25 1440 < th dose dependent rect. 24 23
480 212.69 temperature 25 1440 < th dose dependent rect. 17 9
488 212.73 temperature 15 1440 > th dose dependent rect. 20 14
496 212.76 temperature 25 1440 < th dose dependent no NA NA
499 212.79 temperature 25 1440 < th dose dependent rect. 16 12
527 212.88 temperature 25 1440 < th dose dependent rect. 17 6
547 212.98 temperature 25 1440 < th dose dependent rect. 20 23
556 213.06 temperature 30 1440 < th dose dependent sin 9 NA
667 213.49 temperature 15 1440 > th dose dependent sin 9 NA
730 213.76 temperature 25 1440 < th dose dependent rect. 20 2
944 214.71 temperature 15 1440 > th dose dependent rect. 18 11