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Os03g0390600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H3.3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.4 (0.0127) R2 : 0.534
β1 : 1.04 (0.0466) R2dD : 0.526 R2D : 0.417
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.251 (0.0272) R2dN8 : 0.117 R2N8 : 0.00754
σ : 0.239
deviance : 26.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.1 0.17 16.5 0.351 0.385 0.413 0.0772 -2.83 0.108 23.6 25.4 3660 -- --
14.53 0.178 16.5 0.86 0.403 0.293 0.0745 -- 0.138 23.5 14.18 8080 -- --
13.12 0.169 16.5 0.355 0.386 0.418 -- -2.88 0.113 23.6 25.59 3600 -- --
14.42 0.177 16.5 0.898 0.401 0.245 -- -- 0.175 23.5 13.95 8041 -- --
21.89 0.218 16.5 0.469 -- 0.419 -- -1.92 0.0951 -- 24.25 2339 -- --
15.44 0.184 16.5 1.03 0.412 -- 0.0124 -- 0.247 23.5 -- -- -- --
15.44 0.184 16.5 1.03 0.412 -- -- -- 0.247 23.5 -- -- -- --
22.01 0.218 16.5 0.903 -- 0.473 -- -- 0.161 -- 16.24 887 -- --
19.94 0.208 16.5 -- 0.398 0.776 -- -- -0.0991 23.4 7.929 47520 -- --
26.1 0.239 16.4 1.04 -- -- -- -- 0.251 -- -- -- -- --
43.19 0.307 16.5 -- 0.424 -- -- -- 0.132 23.6 -- -- -- --
29.89 0.255 16.5 -- -- 0.797 -- -- -0.103 -- 7.207 47520 -- --
54.47 0.345 16.5 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.75 humidity 80 43200 < th dose independent rect. 19 3
2 12.76 humidity 50 43200 > th dose independent rect. 15 2
3 12.80 humidity 80 43200 > th dose independent rect. 19 3
4 12.83 humidity 50 43200 > th dose independent rect. 15 4
6 12.83 humidity 50 43200 > th dose independent rect. 15 18
10 12.85 humidity 50 43200 > th dose independent rect. 15 15
13 12.86 temperature 25 4320 > th dose independent rect. 17 1
14 12.86 humidity 50 43200 < th dose independent rect. 15 2
17 12.87 humidity 50 43200 > th dose independent sin 12 NA
18 12.87 humidity 80 43200 < th dose independent rect. 20 1
27 12.88 humidity 70 43200 < th dose dependent rect. 9 3
28 12.89 temperature 25 4320 < th dose independent rect. 17 2
29 12.89 humidity 50 43200 < th dose independent rect. 15 4
32 12.90 humidity 50 43200 < th dose independent rect. 15 18
33 12.90 humidity 70 43200 < th dose dependent rect. 8 5
34 12.90 wind 1 43200 < th dose dependent rect. 14 12
35 12.91 humidity 60 43200 > th dose independent sin 7 NA
43 12.91 humidity 70 43200 < th dose dependent rect. 2 11
47 12.91 humidity 60 43200 < th dose dependent rect. 15 19
48 12.91 humidity 70 43200 < th dose dependent rect. 17 19
50 12.92 humidity 60 43200 > th dose independent rect. 24 13
52 12.92 humidity 70 43200 < th dose dependent sin 7 NA
53 12.92 wind 1 43200 < th dose dependent rect. 24 1
58 12.92 wind 1 43200 < th dose dependent rect. 16 10
65 12.93 humidity 60 43200 > th dose independent rect. 2 11
68 12.93 humidity 50 43200 < th dose independent rect. 15 15
71 12.93 humidity 60 43200 > th dose dependent rect. 7 2
87 12.94 temperature 25 4320 > th dose dependent rect. 17 1
90 12.94 humidity 60 43200 < th dose dependent rect. 15 2
115 12.95 humidity 60 43200 < th dose dependent rect. 14 5
125 12.96 humidity 50 43200 < th dose independent sin 12 NA
126 12.96 wind 1 43200 < th dose independent rect. 24 1
136 12.96 humidity 60 43200 < th dose dependent rect. 14 15
138 12.97 humidity 60 43200 < th dose independent sin 5 NA
139 12.97 temperature 25 1440 > th dose independent rect. 7 1
140 12.97 temperature 25 1440 < th dose independent rect. 7 1
142 12.97 humidity 60 43200 > th dose independent rect. 7 7
146 12.97 humidity 60 43200 < th dose dependent sin 12 NA
158 12.97 humidity 60 43200 < th dose dependent rect. 14 13
172 12.98 humidity 60 43200 > th dose independent rect. 8 5
182 12.98 humidity 60 43200 < th dose dependent sin 14 NA
183 12.98 temperature 25 4320 > th dose dependent rect. 16 5
202 12.99 humidity 60 43200 < th dose independent rect. 24 14
213 12.99 wind 1 43200 < th dose dependent sin 16 NA
246 13.00 humidity 60 43200 < th dose independent rect. 2 12
276 13.00 humidity 70 43200 < th dose dependent rect. 8 10
288 13.01 humidity 70 43200 < th dose independent rect. 16 4
354 13.02 radiation 10 43200 > th dose independent rect. 7 1
433 13.03 humidity 60 43200 > th dose independent no NA NA
435 13.03 wind 7 14400 > th dose independent rect. 5 2
460 13.03 humidity 60 43200 > th dose independent rect. 8 20
503 13.03 wind 1 43200 < th dose dependent rect. 21 5
524 13.04 humidity 60 43200 < th dose independent no NA NA
528 13.04 humidity 70 43200 > th dose independent rect. 16 4
534 13.04 humidity 60 43200 < th dose independent rect. 7 7
566 13.04 humidity 60 43200 > th dose independent rect. 8 18
589 13.04 humidity 60 43200 < th dose independent rect. 8 21
599 13.04 humidity 60 43200 < th dose independent rect. 16 22
615 13.04 humidity 60 43200 < th dose independent rect. 14 23
627 13.04 radiation 20 43200 < th dose dependent rect. 7 2
657 13.05 radiation 20 43200 > th dose independent sin 9 NA
670 13.05 humidity 70 43200 < th dose independent rect. 12 8
772 13.06 radiation 10 43200 < th dose independent rect. 14 1
773 13.06 humidity 70 43200 < th dose independent rect. 8 2
775 13.06 radiation 10 43200 < th dose independent rect. 12 3
777 13.06 humidity 70 43200 < th dose independent rect. 6 5
838 13.06 radiation 20 43200 < th dose dependent rect. 21 13
846 13.06 radiation 20 43200 < th dose dependent rect. 19 15
915 13.07 humidity 60 43200 < th dose independent rect. 8 17
934 13.07 radiation 20 43200 < th dose dependent sin 7 NA