Os04g0450800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone H3 family protein.
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Os04g0450800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone H3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.44 | 0.223 | 15.1 | -0.258 | 0.885 | 0.168 | 0.0316 | -3.38 | -0.0412 | 23.5 | 25.24 | 5421 | -- | -- |
| 24.3 | 0.23 | 14.9 | 0.762 | 0.857 | -0.456 | -0.129 | -- | 0.37 | 23.4 | 31.7 | 17700 | -- | -- |
| 22.44 | 0.221 | 15.1 | -0.258 | 0.884 | 0.173 | -- | -3.4 | -0.0387 | 23.5 | 25.4 | 5422 | -- | -- |
| 24.02 | 0.228 | 15 | 0.722 | 0.886 | -0.358 | -- | -- | 0.326 | 23.4 | 31.04 | 19064 | -- | -- |
| 61.1 | 0.366 | 15 | 0.737 | -- | -0.744 | -- | -0.0213 | 0.274 | -- | 22.28 | 10284 | -- | -- |
| 27.02 | 0.244 | 15 | 0.579 | 0.873 | -- | -0.0569 | -- | 0.155 | 23.4 | -- | -- | -- | -- |
| 27.03 | 0.243 | 15 | 0.582 | 0.873 | -- | -- | -- | 0.155 | 23.4 | -- | -- | -- | -- |
| 61.1 | 0.366 | 15 | 0.741 | -- | -0.745 | -- | -- | 0.275 | -- | 22.28 | 10284 | -- | -- |
| 30.25 | 0.256 | 15 | -- | 0.867 | 0.382 | -- | -- | -0.0236 | 23.4 | 1.786 | 47520 | -- | -- |
| 74.82 | 0.404 | 15 | 0.604 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 35.95 | 0.28 | 15 | -- | 0.879 | -- | -- | -- | 0.0907 | 23.4 | -- | -- | -- | -- |
| 73.68 | 0.4 | 15 | -- | -- | 0.777 | -- | -- | -0.0027 | -- | 14.3 | 858 | -- | -- |
| 84.46 | 0.429 | 15 | -- | -- | -- | -- | -- | 0.0972 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.48 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 2 | 21.60 | temperature | 15 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 21.65 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 9 | 21.69 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 12 | 21.71 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 50 | 21.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 63 | 21.80 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 70 | 21.80 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 131 | 21.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 164 | 21.85 | temperature | 20 | 14400 | > th | dose dependent | sin | 20 | NA |
| 187 | 21.85 | temperature | 20 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 226 | 21.86 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 370 | 21.89 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 375 | 21.89 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 425 | 21.89 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 509 | 21.90 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 559 | 21.91 | temperature | 15 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 659 | 21.93 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 660 | 21.93 | radiation | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 928 | 21.97 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 932 | 21.97 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 1 |