BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0169800 Os05g0169800|J033136O18
(79 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0169800 Protein of unknown function DUF239, plant doma... 138 9e-34
Os01g0170500 Protein of unknown function DUF239, plant doma... 102 5e-23
Os01g0547133 Protein of unknown function DUF239, plant doma... 97 2e-21
Os06g0474500 Protein of unknown function DUF239, plant doma... 94 2e-20
Os03g0807100 Protein of unknown function DUF239, plant doma... 89 9e-19
Os07g0205500 Protein of unknown function DUF239, plant doma... 87 2e-18
Os07g0573400 Protein of unknown function DUF239, plant doma... 82 6e-17
Os01g0550900 Protein of unknown function DUF239, plant doma... 67 3e-12
Os08g0566100 Protein of unknown function DUF239, plant doma... 65 1e-11
Os01g0973100 Protein of unknown function DUF239, plant doma... 64 2e-11
Os01g0550800 Protein of unknown function DUF239, plant doma... 63 4e-11
Os06g0277900 Protein of unknown function DUF239, plant doma... 62 6e-11
>Os05g0169800 Protein of unknown function DUF239, plant domain containing
protein
Length = 79
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 68/79 (86%)
Query: 1 MHMQHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
MHMQHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV
Sbjct: 1 MHMQHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
Query: 61 XXXXXXXXXXXETCSVNQA 79
ETCSVNQA
Sbjct: 61 LHFLFFLSSFSETCSVNQA 79
>Os01g0170500 Protein of unknown function DUF239, plant domain containing protein
Length = 427
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 54/57 (94%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
+HAVGY++G QFYGAKASLNVW A+VA+ AEFSLSQIW+ISGSFGNDLNTIEAGWQV
Sbjct: 180 EHAVGYVTGDQFYGAKASLNVWSARVATAAEFSLSQIWVISGSFGNDLNTIEAGWQV 236
>Os01g0547133 Protein of unknown function DUF239, plant domain containing protein
Length = 424
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 53/57 (92%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
+HAVGY++G ++YGAKAS+NVW KV++P EFSLSQIW+I+GSFGNDLNTIEAGWQV
Sbjct: 175 EHAVGYVAGEEYYGAKASINVWAPKVSTPEEFSLSQIWVIAGSFGNDLNTIEAGWQV 231
>Os06g0474500 Protein of unknown function DUF239, plant domain containing protein
Length = 434
Score = 94.4 bits (233), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
+HAVGY++ +YGAKAS+NVW ++ P+EFSLSQIW+ISGSFGNDLNTIEAGWQV
Sbjct: 187 EHAVGYVNNDNYYGAKASVNVWSPRIGDPSEFSLSQIWVISGSFGNDLNTIEAGWQV 243
>Os03g0807100 Protein of unknown function DUF239, plant domain containing
protein
Length = 102
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 48/58 (82%)
Query: 3 MQHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
+QHA+ Y+ G ++YGAKA++NVW K+ P EFSLSQ+W++ GSFG DLN+IEAGWQV
Sbjct: 33 LQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQV 90
>Os07g0205500 Protein of unknown function DUF239, plant domain containing protein
Length = 408
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
QHA+ Y+ G ++YGAKA++NVW K+ P EFSLSQ+W++ GSFG DLN+IEAGWQV
Sbjct: 161 QHAIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGEDLNSIEAGWQV 217
>Os07g0573400 Protein of unknown function DUF239, plant domain containing protein
Length = 430
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
QHA+ Y+ G ++YGAKA++NVW ++ EFSLSQ+W++ GSFG DLN+IEAGWQV
Sbjct: 183 QHAIAYVEGDKYYGAKATINVWQPRIEQANEFSLSQLWILGGSFGQDLNSIEAGWQV 239
>Os01g0550900 Protein of unknown function DUF239, plant domain containing protein
Length = 289
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 3 MQHAVGYMSG-GQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGN-DLNTIEAGWQV 60
+Q+ V Y +G ++YG K ++NVW K+A+ +FS++Q+W+ +GS+ N DLNTIEAGWQV
Sbjct: 87 IQYGVAYATGNAKYYGTKVTINVWKPKIATSRDFSMAQLWITAGSYANKDLNTIEAGWQV 146
>Os08g0566100 Protein of unknown function DUF239, plant domain containing protein
Length = 433
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
Query: 4 QHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSF-GNDLNTIEAGWQV 60
+HA+ Y + + YGA+A+++VW ++ FSLSQ+W++SGSF G+DLN+IEAGWQV
Sbjct: 175 EHAIAY-TAAEVYGARATISVWAPEIDEANGFSLSQLWILSGSFNGSDLNSIEAGWQV 231
>Os01g0973100 Protein of unknown function DUF239, plant domain containing protein
Length = 256
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 2 HMQHAVGYMSG-GQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGN-DLNTIEAGWQ 59
H Q+ V +G +YG KA++N+W +A+ +FSL+Q+W+ +GS+ N DLNTIEAGWQ
Sbjct: 164 HHQYGVASATGDANYYGTKATINLWQPTIATSGDFSLAQLWISAGSYQNKDLNTIEAGWQ 223
Query: 60 V 60
V
Sbjct: 224 V 224
>Os01g0550800 Protein of unknown function DUF239, plant domain containing protein
Length = 406
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 4 QHAVGYMSG-GQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGN-DLNTIEAGWQV 60
+ V Y +G +YG K ++NVW +A+ +FSLSQ+W+ +GS+ N DLNTIEAGWQV
Sbjct: 156 HYGVAYATGDSNYYGTKVTINVWQPTIATFGDFSLSQLWITAGSYENKDLNTIEAGWQV 214
>Os06g0277900 Protein of unknown function DUF239, plant domain containing protein
Length = 366
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 5 HAVGYMSG-GQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGN-DLNTIEAGWQV 60
+ V Y +G +YG K ++NVW +A+ +FSLSQ+W+ +GS+ N DLNTIE GWQV
Sbjct: 117 YGVAYATGDANYYGTKVTINVWQPTIATSGDFSLSQLWISAGSYDNKDLNTIETGWQV 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.128 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,378,973
Number of extensions: 67757
Number of successful extensions: 115
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)