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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0573400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0327) R2 : 0.441
β1 : -1.89 (0.12) R2dD : 0.317 R2D : 0.354
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.508 (0.0698) R2dN8 : 0.087 R2N8 : 0.123
σ : 0.613
deviance : 172.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.8 0.579 5.27 -1.37 0.0969 0.00886 -0.76 -4.57 0.635 20.7 29.1 174 -- --
164.74 0.602 5.34 -1.98 0.189 -0.278 -0.724 -- 0.486 23 29.1 174 -- --
153.66 0.577 5.27 -1.36 0.101 0.00181 -- -4.5 0.631 21.9 29.17 173 -- --
157.72 0.585 5.32 -1.97 0.149 -0.7 -- -- 0.572 22.8 30.29 60 -- --
154.27 0.578 5.27 -1.34 -- 0.0103 -- -4.58 0.634 -- 29.16 173 -- --
169.08 0.61 5.34 -1.92 0.111 -- -0.764 -- 0.504 22.7 -- -- -- --
170.45 0.611 5.34 -1.89 0.188 -- -- -- 0.511 19.5 -- -- -- --
158.87 0.587 5.32 -1.97 -- -0.705 -- -- 0.565 -- 30.48 79 -- --
258.68 0.749 5.28 -- 0.129 -0.534 -- -- 0.763 22.5 30.5 66 -- --
172.33 0.613 5.33 -1.89 -- -- -- -- 0.508 -- -- -- -- --
264.33 0.761 5.29 -- 0.207 -- -- -- 0.721 18.8 -- -- -- --
259.56 0.75 5.28 -- -- -0.514 -- -- 0.766 -- 30.59 74 -- --
266.58 0.762 5.29 -- -- -- -- -- 0.717 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.82 atmosphere 995.0 43200 < th dose dependent rect. 4 9
6 150.05 wind 9.0 43200 < th dose independent rect. 9 1
8 150.18 atmosphere 995.0 43200 < th dose independent rect. 5 9
9 150.21 atmosphere 995.0 43200 > th dose independent rect. 7 1
11 150.28 atmosphere 995.0 43200 > th dose independent rect. 6 6
13 150.48 atmosphere 995.0 43200 < th dose dependent rect. 5 4
14 150.53 humidity 80.0 720 > th dose dependent rect. 12 1
16 150.65 humidity 80.0 720 > th dose independent rect. 12 1
17 150.74 wind 9.0 43200 > th dose dependent rect. 15 21
18 150.81 wind 7.0 43200 > th dose dependent rect. 8 2
20 150.97 atmosphere 995.0 43200 < th dose dependent sin 2 NA
23 151.11 temperature 30.0 270 > th dose independent rect. 17 21
30 151.28 wind 9.0 43200 > th dose dependent rect. 21 16
34 151.34 wind 9.0 43200 > th dose dependent rect. 1 12
36 151.36 wind 9.0 43200 > th dose independent rect. 21 13
38 151.37 wind 9.0 43200 > th dose dependent rect. 23 14
39 151.38 wind 9.0 43200 > th dose dependent rect. 4 9
44 151.44 wind 9.0 43200 > th dose dependent sin 5 NA
51 151.50 wind 9.0 43200 > th dose dependent rect. 8 5
55 151.54 temperature 15.0 30 > th dose dependent rect. 13 23
57 151.56 wind 9.0 43200 > th dose independent rect. 9 1
65 151.62 wind 9.0 43200 > th dose dependent rect. 18 19
68 151.66 atmosphere 995.0 43200 > th dose independent rect. 12 11
75 151.68 atmosphere 995.0 43200 < th dose independent rect. 13 10
76 151.68 wind 9.0 43200 < th dose independent rect. 21 13
82 151.75 wind 9.0 43200 < th dose independent rect. 23 1
87 151.81 wind 9.0 43200 < th dose independent rect. 7 3
92 151.85 temperature 30.0 270 > th dose independent rect. 12 2
93 151.86 atmosphere 995.0 43200 > th dose independent sin 19 NA
101 151.95 wind 9.0 43200 > th dose dependent rect. 23 1
102 151.96 atmosphere 995.0 43200 > th dose independent rect. 11 13
103 152.01 wind 9.0 43200 > th dose dependent rect. 23 4
109 152.09 atmosphere 995.0 43200 < th dose independent rect. 11 13
114 152.14 wind 9.0 43200 > th dose dependent rect. 21 22
116 152.18 wind 9.0 43200 > th dose dependent rect. 23 20
119 152.19 wind 9.0 43200 > th dose dependent rect. 21 20
120 152.20 atmosphere 995.0 43200 < th dose independent sin 19 NA
126 152.25 wind 9.0 43200 > th dose dependent rect. 1 18
127 152.25 wind 9.0 43200 > th dose dependent rect. 23 18
129 152.26 wind 9.0 43200 > th dose dependent rect. 21 12
132 152.27 wind 9.0 43200 > th dose dependent rect. 4 15
138 152.29 temperature 25.0 270 > th dose dependent rect. 9 6
141 152.31 wind 9.0 43200 > th dose independent rect. 23 1
142 152.32 atmosphere 995.0 43200 > th dose independent rect. 5 9
143 152.32 atmosphere 995.0 43200 < th dose dependent rect. 14 9
146 152.33 wind 9.0 43200 > th dose dependent rect. 4 13
177 152.50 atmosphere 995.0 43200 < th dose independent rect. 10 15
182 152.51 wind 9.0 43200 > th dose dependent rect. 18 16
183 152.52 wind 9.0 43200 > th dose independent rect. 1 9
190 152.59 temperature 30.0 270 > th dose independent rect. 8 6
204 152.59 atmosphere 995.0 43200 > th dose independent rect. 1 19
213 152.62 atmosphere 995.0 43200 < th dose dependent rect. 3 19
247 152.74 wind 9.0 43200 > th dose independent rect. 21 15
255 152.78 temperature 25.0 10 > th dose dependent rect. 12 9
257 152.78 temperature 15.0 30 > th dose dependent rect. 15 23
260 152.80 atmosphere 995.0 43200 < th dose independent rect. 1 18
280 152.85 precipitation 0.1 43200 > th dose dependent rect. 5 12
311 152.92 atmosphere 995.0 43200 < th dose independent rect. 7 6
326 152.94 atmosphere 995.0 43200 < th dose dependent rect. 7 7
328 152.94 atmosphere 995.0 43200 < th dose dependent rect. 5 20
342 152.97 temperature 25.0 90 > th dose dependent rect. 11 10
355 152.99 atmosphere 995.0 43200 < th dose dependent rect. 7 18
365 153.01 atmosphere 995.0 43200 < th dose independent rect. 7 4
382 153.04 temperature 20.0 1440 > th dose independent rect. 21 3
388 153.04 wind 9.0 43200 > th dose dependent rect. 18 23
389 153.05 atmosphere 995.0 43200 < th dose independent rect. 8 18
393 153.06 temperature 30.0 270 < th dose independent sin 3 NA
399 153.06 atmosphere 1005.0 270 > th dose dependent rect. 10 10
411 153.10 wind 9.0 43200 > th dose independent rect. 23 4
424 153.13 wind 9.0 43200 < th dose independent rect. 1 9
443 153.16 atmosphere 995.0 43200 > th dose independent rect. 9 1
456 153.18 temperature 30.0 270 < th dose independent rect. 22 23
475 153.21 atmosphere 995.0 43200 < th dose independent rect. 7 1
488 153.21 atmosphere 995.0 43200 < th dose dependent rect. 7 1
512 153.24 precipitation 0.1 43200 > th dose independent rect. 4 14
517 153.25 precipitation 0.1 43200 < th dose independent rect. 4 14
519 153.25 precipitation 0.1 43200 < th dose dependent rect. 4 14
522 153.26 atmosphere 1005.0 270 > th dose dependent rect. 10 8
548 153.29 atmosphere 1005.0 10 > th dose dependent rect. 12 6
549 153.30 temperature 30.0 270 > th dose independent sin 3 NA
551 153.30 precipitation 0.1 43200 < th dose independent rect. 5 12
553 153.30 precipitation 0.1 43200 < th dose dependent rect. 5 12
560 153.32 temperature 25.0 270 > th dose dependent sin 1 NA
571 153.34 wind 9.0 43200 < th dose independent rect. 21 15
628 153.46 temperature 20.0 1440 < th dose independent rect. 21 2
632 153.46 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
688 153.60 radiation 10.0 720 < th dose dependent rect. 12 15
693 153.61 humidity 70.0 14400 < th dose dependent rect. 21 10
700 153.63 wind 9.0 43200 > th dose dependent rect. 4 20
702 153.63 wind 9.0 43200 > th dose dependent rect. 4 22
704 153.63 wind 9.0 43200 > th dose dependent rect. 1 23
708 153.65 wind 9.0 43200 < th dose independent rect. 23 3
710 153.65 wind 9.0 43200 > th dose dependent no NA NA
716 153.65 temperature 25.0 90 > th dose dependent rect. 9 12
726 153.66 temperature 25.0 90 > th dose dependent sin 21 NA
752 153.71 wind 9.0 43200 > th dose dependent rect. 6 23
762 153.74 radiation 1.0 1440 < th dose independent rect. 11 1
764 153.74 radiation 1.0 1440 < th dose dependent rect. 11 1
848 153.84 atmosphere 995.0 43200 < th dose dependent rect. 13 11
889 153.91 radiation 10.0 720 < th dose dependent rect. 9 18
906 153.94 atmosphere 995.0 43200 > th dose independent sin 3 NA
931 153.99 humidity 80.0 1440 > th dose independent rect. 23 2
934 154.00 wind 9.0 43200 > th dose independent rect. 16 19
950 154.04 humidity 80.0 1440 < th dose independent rect. 24 14
976 154.11 atmosphere 995.0 43200 < th dose independent sin 3 NA
977 154.11 atmosphere 995.0 43200 < th dose dependent sin 18 NA
979 154.11 atmosphere 995.0 43200 < th dose dependent rect. 12 13
996 154.14 radiation 40.0 720 > th dose dependent rect. 12 1