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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0169800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.15 (0.0327) R2 : 0.686
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.34 (0.109) R2dC : 0.188 R2C : 0.419
β3 : 1.52 (0.113) R2dE : 0.241 R2E : 0.497
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.183 (0.0744) R2dN8 : 0.00505 R2N8 : 0.0231
σ : 0.605
deviance : 168.77
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_____
C
peak time of C : 5.62
E
wheather : temperature
threshold : 24.5
memory length : 232
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.74 0.592 4.14 -0.296 1.37 1.51 1.83 -1.17 -0.187 5.35 24.61 252 23.6 --
161.79 0.592 4.15 -0.298 1.35 1.58 1.08 -- -0.183 5.29 24.6 242 23.5 --
163.79 0.596 4.14 -0.327 1.37 1.53 -- -0.241 -0.202 5.49 24.5 246 23.5 --
163.48 0.595 4.14 -0.388 1.31 1.54 -- -- -0.196 5.66 24.54 230 23.7 --
216.13 0.685 4.28 -0.682 -- 2.35 -- 0.832 -0.647 -- 47.17 35 0.185 --
216.13 0.689 4.23 -0.701 2.35 -- 0.832 -- -0.647 6.11 -- -- -- --
217.76 0.691 4.23 -0.692 2.35 -- -- -- -0.65 6.16 -- -- -- --
191.27 0.644 4.27 -0.665 -- 2.23 -- -- -0.643 -- 26.43 262 1.09 --
168.77 0.605 4.15 -- 1.34 1.52 -- -- -0.183 5.62 24.5 232 23.5 --
505.27 1.05 4.27 -0.626 -- -- -- -- -0.597 -- -- -- -- --
230.38 0.71 4.21 -- 2.34 -- -- -- -0.573 6.18 -- -- -- --
194.89 0.65 4.19 -- -- 2.35 -- -- -0.386 -- 26.5 273 1.29 --
515.62 1.06 4.25 -- -- -- -- -- -0.528 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.40 temperature 25 270 < th dose independent rect. 1 10
12 161.28 temperature 30 270 < th dose dependent rect. 1 10
14 161.97 temperature 25 270 < th dose independent sin 6 NA
32 166.07 temperature 15 270 > th dose dependent rect. 5 8
34 166.13 temperature 20 270 > th dose dependent rect. 6 5
61 168.83 temperature 20 10 > th dose dependent rect. 6 8
70 169.57 temperature 25 270 > th dose independent sin 6 NA
71 169.62 temperature 25 270 > th dose independent rect. 24 12
101 171.07 temperature 30 10 < th dose dependent rect. 4 8
108 171.37 temperature 10 10 > th dose dependent rect. 6 23
126 171.70 temperature 10 270 > th dose dependent rect. 21 14
146 172.32 temperature 10 90 > th dose dependent sin 4 NA
153 172.44 temperature 30 270 < th dose dependent sin 6 NA
157 172.51 temperature 20 90 > th dose dependent sin 4 NA
187 173.12 temperature 10 270 > th dose dependent rect. 6 19
193 173.20 temperature 25 270 > th dose independent rect. 6 5
219 173.70 temperature 30 720 < th dose dependent rect. 24 6
359 175.83 temperature 20 90 > th dose dependent rect. 1 12
374 176.04 temperature 25 720 < th dose dependent rect. 3 2
576 178.30 temperature 20 720 < th dose independent rect. 5 1
734 179.62 temperature 10 10 > th dose dependent rect. 8 20