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Os01g0973100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0526) R2 : 0.787
β1 : 8.68 (0.287) R2dD : 0.996 R2D : -0.282
β2 : 1.58 (0.132) R2dC : 0.0678 R2C : 0.041
β3 : -4.92 (0.191) R2dE : 0.354 R2E : 0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.2 (0.841) R2dD*E : 0.448 R2D*E : -0.634
γ1 : 2.18 (0.114) R2dN8 : 0.242 R2N8 : 0.104
σ : 0.979
deviance : 441.68
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C
peak time of C : 20.4
E
wheather : radiation
threshold : 0.17
memory length : 4316
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 11.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
435.79 0.981 11.7 8.66 1.6 -4.93 -1.45 -17.2 2.19 20.3 0.1693 4318 17.8 11.7
1066.2 1.52 11.7 8.69 1.86 -4.45 -1.58 -- 2.25 20.2 3.719 5752 17.8 11.8
441.68 0.979 11.7 8.68 1.58 -4.92 -- -17.2 2.18 20.4 0.17 4316 17.8 11.7
698.4 1.23 11.9 6.59 0.506 -7 -- -- 1.14 17.2 4.001 47520 18 11.7
551.12 1.09 11.7 8.64 -- -4.98 -- -17.1 2.2 -- 0.1693 4283 17.8 11.7
1259.96 1.66 11.6 3.89 1.64 -- -0.615 -- 2.19 21.2 -- -- -- --
1261.14 1.66 11.6 3.91 1.64 -- -- -- 2.19 21.3 -- -- -- --
647.89 1.19 11.6 4.49 -- -5.23 -- -- 1.29 -- 2.878 47520 18 11.6
419.68 0.954 12.1 -- 1.55 -5.54 -- -- -0.146 20.5 1.49 47520 17.6 14.7
1418.03 1.76 11.5 3.92 -- -- -- -- 2.18 -- -- -- -- --
1664.15 1.91 11.7 -- 1.64 -- -- -- 1.75 21.5 -- -- -- --
535.79 1.08 12.1 -- -- -5.51 -- -- -0.338 -- 1.11 47520 17.9 12.4
1822.82 1.99 11.6 -- -- -- -- -- 1.75 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 388.17 radiation 1.0 43200 < th dose dependent rect. 18 12
4 393.07 radiation 1.0 43200 < th dose dependent rect. 4 2
10 393.24 radiation 1.0 43200 < th dose dependent rect. 22 8
19 396.52 radiation 1.0 43200 < th dose dependent rect. 18 8
28 397.66 radiation 1.0 43200 < th dose dependent rect. 18 3
42 398.48 radiation 1.0 43200 < th dose dependent sin 11 NA
49 399.54 wind 9.0 43200 < th dose independent rect. 16 1
90 403.98 wind 9.0 43200 > th dose independent rect. 16 1
110 406.12 humidity 80.0 43200 < th dose independent rect. 15 2
116 406.39 precipitation 0.1 43200 > th dose independent rect. 3 3
118 406.58 radiation 1.0 43200 > th dose independent rect. 18 12
119 406.66 radiation 1.0 43200 > th dose independent rect. 18 15
125 406.94 precipitation 0.1 43200 < th dose independent rect. 3 3
126 406.94 precipitation 0.1 43200 < th dose dependent rect. 3 3
128 407.03 radiation 1.0 43200 < th dose independent rect. 18 15
140 407.42 humidity 80.0 43200 < th dose independent rect. 14 4
150 407.85 precipitation 0.1 43200 > th dose dependent rect. 2 4
157 408.54 radiation 1.0 43200 < th dose dependent rect. 7 23
158 408.56 humidity 80.0 43200 < th dose independent rect. 11 8
166 409.02 radiation 1.0 43200 < th dose dependent rect. 10 20
208 410.66 humidity 80.0 43200 > th dose independent rect. 14 4
210 410.75 radiation 1.0 43200 < th dose independent rect. 18 12
214 410.88 humidity 80.0 43200 > th dose independent rect. 11 8
215 410.91 radiation 1.0 43200 < th dose dependent rect. 4 22
216 410.92 radiation 1.0 43200 > th dose independent rect. 17 2
228 410.93 radiation 1.0 43200 < th dose dependent no NA NA
230 410.93 radiation 1.0 43200 < th dose dependent rect. 22 23
235 410.94 radiation 1.0 43200 < th dose dependent rect. 1 23
237 410.94 radiation 1.0 43200 < th dose dependent rect. 20 23
250 410.97 radiation 1.0 43200 < th dose dependent rect. 4 17
290 411.68 radiation 1.0 43200 < th dose independent rect. 17 4
291 411.69 radiation 1.0 43200 < th dose independent rect. 17 6
358 414.50 humidity 70.0 43200 > th dose dependent rect. 13 2
390 416.78 temperature 15.0 43200 > th dose dependent rect. 5 2
429 418.61 humidity 90.0 43200 > th dose independent rect. 20 1
443 419.50 radiation 1.0 43200 < th dose dependent rect. 7 19
451 419.68 radiation 1.0 43200 < th dose dependent rect. 7 14
461 420.15 radiation 1.0 43200 < th dose independent sin 11 NA
462 420.16 temperature 25.0 43200 < th dose dependent rect. 5 1
476 420.82 radiation 1.0 43200 > th dose independent sin 11 NA
481 420.97 radiation 1.0 43200 < th dose dependent rect. 9 17
493 421.19 radiation 1.0 43200 < th dose dependent rect. 9 12
500 421.26 radiation 1.0 43200 < th dose independent rect. 7 23
563 422.66 radiation 1.0 43200 > th dose independent rect. 7 23
577 422.97 humidity 90.0 43200 > th dose dependent rect. 5 4
594 423.30 humidity 80.0 43200 > th dose dependent rect. 18 1
611 423.88 humidity 80.0 43200 > th dose independent rect. 16 1
615 423.92 radiation 1.0 43200 > th dose independent rect. 5 6
622 424.11 radiation 1.0 43200 < th dose independent rect. 5 6
651 425.04 radiation 1.0 43200 < th dose independent rect. 5 15
653 425.04 radiation 1.0 43200 < th dose independent rect. 5 18
671 425.30 radiation 1.0 43200 < th dose independent rect. 7 14
740 426.04 radiation 1.0 43200 < th dose independent rect. 22 13
777 426.11 radiation 1.0 43200 < th dose independent rect. 22 22
783 426.12 radiation 1.0 43200 < th dose independent no NA NA
793 426.13 radiation 1.0 43200 < th dose independent rect. 20 23
844 426.59 radiation 1.0 43200 > th dose independent rect. 5 14
877 426.80 radiation 1.0 43200 < th dose independent rect. 10 23
916 427.34 radiation 1.0 43200 > th dose independent rect. 7 12
963 427.71 radiation 1.0 43200 > th dose independent no NA NA