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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0550900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0238) R2 : 0.268
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.01 (0.311) R2dE : 0.268 R2E : 0.266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0419 (0.0502) R2dN8 : 0.00145 R2N8 : -0.000438
σ : 0.448
deviance : 92.42
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C
peak time of C : --
E
wheather : wind
threshold : 7.868
memory length : 251
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.07
open length of G : 2.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.44 0.449 2.85 0.152 0.0997 5.17 0.158 5.39 0.0541 4.25 8.099 212 7.15 2.07
92.42 0.448 2.84 0.278 0.101 4.16 0.479 -- 0.0683 3.47 8.1 203 7.1 2.03
91.48 0.445 2.85 0.15 0.105 5.16 -- 5.38 0.0529 5.01 8.096 211 7.13 2.1
91.54 0.446 2.84 0.123 0.105 4 -- -- 0.055 4.93 7.928 252 7.08 2.02
92.05 0.447 2.86 0.155 -- 5.17 -- 5.42 0.0558 -- 8.056 214 7.12 2.1
124.58 0.523 2.85 0.0186 0.101 -- -0.508 -- 0.0132 9.56 -- -- -- --
125.3 0.524 2.85 -0.00311 0.128 -- -- -- 0.0106 7.49 -- -- -- --
92.06 0.447 2.84 0.117 -- 4.05 -- -- 0.0552 -- 7.892 245 7.07 2.03
91.83 0.446 2.85 -- 0.106 4.01 -- -- 0.0398 5.03 7.879 251 7.07 2.02
126.17 0.525 2.85 -0.00116 -- -- -- -- 0.0126 -- -- -- -- --
125.3 0.524 2.85 -- 0.128 -- -- -- 0.011 7.49 -- -- -- --
92.42 0.448 2.85 -- -- 4.01 -- -- 0.0419 -- 7.868 251 7.07 2.02
126.17 0.524 2.85 -- -- -- -- -- 0.0128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.55 wind 9.0 270 > th dose dependent rect. 9 1
16 98.46 wind 7.0 10 > th dose dependent rect. 12 1
22 100.70 wind 7.0 270 > th dose independent rect. 7 2
25 100.73 wind 9.0 270 > th dose independent rect. 9 1
46 105.42 wind 7.0 10 > th dose independent rect. 12 1
91 112.45 wind 5.0 720 < th dose independent rect. 1 7
243 114.67 wind 5.0 720 > th dose independent rect. 1 2
251 114.76 wind 5.0 720 > th dose dependent rect. 1 2
256 114.80 wind 7.0 90 > th dose dependent rect. 18 1
270 114.88 radiation 1.0 90 > th dose dependent rect. 18 1
293 114.97 humidity 90.0 270 > th dose independent rect. 8 1
310 115.07 wind 7.0 90 > th dose independent rect. 18 1
318 115.08 wind 7.0 720 < th dose dependent rect. 1 10
333 115.25 wind 5.0 720 < th dose independent sin 7 NA
354 115.37 wind 7.0 90 > th dose dependent rect. 18 3
355 115.38 wind 5.0 720 > th dose independent sin 7 NA
364 115.44 precipitation 0.1 720 > th dose dependent rect. 3 2
366 115.46 precipitation 0.1 720 > th dose independent rect. 3 2
425 115.70 wind 3.0 720 > th dose dependent sin 7 NA
433 115.72 wind 7.0 720 < th dose dependent rect. 23 12
497 116.05 wind 7.0 720 < th dose dependent sin 6 NA
554 116.31 wind 5.0 10 > th dose independent rect. 10 1
561 116.31 wind 5.0 10 > th dose dependent rect. 10 1
716 116.70 wind 7.0 30 > th dose independent rect. 9 4
768 116.84 wind 9.0 270 > th dose dependent rect. 17 17
854 117.07 humidity 90.0 90 > th dose dependent rect. 8 1
865 117.09 precipitation 0.1 720 > th dose dependent rect. 23 6
871 117.11 precipitation 0.1 720 > th dose independent rect. 23 6
873 117.11 wind 9.0 270 > th dose dependent sin 12 NA
875 117.11 precipitation 0.1 720 > th dose dependent rect. 22 8
896 117.16 precipitation 0.1 720 > th dose independent rect. 22 8
950 117.29 wind 5.0 10 > th dose independent rect. 20 1