Os01g0550800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF239, plant domain containing protein.
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Os01g0550800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF239, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.03 | 0.298 | 2.92 | -0.0301 | 0.105 | -0.152 | -0.655 | 0.473 | 0.0154 | 2.46 | 10 | 16 | -- | -- |
| 41.51 | 0.302 | 2.92 | -0.0527 | 0.0688 | -0.103 | -0.445 | -- | 0.00578 | 5.33 | 10 | 16 | -- | -- |
| 41.79 | 0.303 | 2.92 | -0.0398 | 0.103 | -0.152 | -- | 0.13 | 0.0133 | 2.35 | 10 | 16 | -- | -- |
| 41.89 | 0.303 | 2.92 | -0.0513 | 0.104 | -0.152 | -- | -- | 0.0108 | 2.43 | 9.83 | 17 | -- | -- |
| 42.12 | 0.304 | 2.92 | -0.0408 | -- | -0.0985 | -- | 0.132 | 0.0117 | -- | 10 | 16 | -- | -- |
| 42.41 | 0.305 | 2.92 | -0.0552 | 0.0821 | -- | -0.418 | -- | -0.000987 | 7.06 | -- | -- | -- | -- |
| 42.68 | 0.306 | 2.92 | -0.0612 | 0.0961 | -- | -- | -- | 0.00113 | 9.45 | -- | -- | -- | -- |
| 42.23 | 0.304 | 2.92 | -0.0517 | -- | -0.0979 | -- | -- | 0.00904 | -- | 9.924 | 14 | -- | -- |
| 41.96 | 0.303 | 2.92 | -- | 0.105 | -0.154 | -- | -- | 0.0167 | 2.37 | 9.83 | 17 | -- | -- |
| 43.22 | 0.307 | 2.92 | -0.0618 | -- | -- | -- | -- | 0.00144 | -- | -- | -- | -- | -- |
| 42.78 | 0.306 | 2.92 | -- | 0.0962 | -- | -- | -- | 0.00795 | 9.5 | -- | -- | -- | -- |
| 42.3 | 0.304 | 2.92 | -- | -- | -0.0993 | -- | -- | 0.0149 | -- | 9.924 | 14 | -- | -- |
| 43.32 | 0.307 | 2.92 | -- | -- | -- | -- | -- | 0.00829 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.99 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 11 | 35.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 37.21 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 44 | 37.21 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 72 | 37.44 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 73 | 37.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 77 | 37.44 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 80 | 37.44 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 81 | 37.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 84 | 37.44 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 85 | 37.44 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 89 | 37.57 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 90 | 37.61 | humidity | 70.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 92 | 37.69 | temperature | 25.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 93 | 37.73 | radiation | 20.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 95 | 37.75 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 96 | 37.78 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 97 | 37.79 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 100 | 37.80 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 102 | 37.83 | radiation | 40.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 105 | 37.85 | wind | 5.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 113 | 37.89 | humidity | 60.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 114 | 37.90 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 120 | 37.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 128 | 37.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 138 | 37.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 140 | 37.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 150 | 37.95 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 152 | 37.98 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 166 | 38.18 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 183 | 38.27 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 184 | 38.34 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 189 | 38.48 | wind | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 192 | 38.57 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 193 | 38.60 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 198 | 38.71 | radiation | 10.0 | 10 | < th | dose independent | sin | 11 | NA |
| 217 | 38.89 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 253 | 39.12 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 257 | 39.12 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 280 | 39.18 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 335 | 39.75 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 338 | 39.78 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 23 |
| 340 | 39.78 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 347 | 39.85 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 361 | 39.89 | radiation | 10.0 | 30 | < th | dose independent | rect. | 21 | 11 |
| 409 | 40.00 | radiation | 10.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 415 | 40.05 | radiation | 10.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 422 | 40.08 | temperature | 25.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 423 | 40.08 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 428 | 40.11 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 433 | 40.12 | humidity | 90.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 434 | 40.12 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 458 | 40.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 461 | 40.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 465 | 40.13 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 471 | 40.13 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 472 | 40.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 494 | 40.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 498 | 40.14 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 499 | 40.14 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 509 | 40.17 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 512 | 40.17 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 515 | 40.18 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 517 | 40.19 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 518 | 40.19 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 526 | 40.20 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 533 | 40.21 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 542 | 40.21 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 549 | 40.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 555 | 40.22 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 556 | 40.22 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 559 | 40.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 562 | 40.22 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 564 | 40.22 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 569 | 40.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 575 | 40.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 577 | 40.22 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 583 | 40.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 588 | 40.23 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 7 |
| 589 | 40.23 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 594 | 40.24 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 605 | 40.26 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 619 | 40.28 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 668 | 40.34 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 673 | 40.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 683 | 40.38 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 724 | 40.41 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 736 | 40.42 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 738 | 40.43 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 774 | 40.46 | wind | 3.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 781 | 40.46 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 815 | 40.48 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 13 |
| 816 | 40.48 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 15 |
| 835 | 40.51 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 853 | 40.54 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 858 | 40.54 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 11 |
| 911 | 40.62 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 918 | 40.63 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 929 | 40.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 965 | 40.68 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 994 | 40.71 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 6 |