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Os06g0277900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.47 (0.0485) R2 : 0.646
β1 : -2.02 (0.18) R2dD : 0.111 R2D : -0.0169
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.33 (0.164) R2dE : 0.738 R2E : 0.53
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.457 (0.115) R2dN8 : 0.0217 R2N8 : -0.0967
σ : 0.876
deviance : 354.15
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.276
memory length : 29814
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.86
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.9 0.866 8.39 -1.91 0.577 4.17 2.07 1.82 -0.268 0.918 0.8794 29554 6.79 --
339.78 0.859 8.44 -1.94 0.554 4.21 1.7 -- -0.299 0.71 1.19 29807 7.13 --
354.75 0.877 8.35 -1.51 0.441 3.98 -- 2.74 -0.119 2.28 0.8767 29592 7.66 --
351.65 0.873 8.47 -1.98 0.268 4.29 -- -- -0.47 1.35 1.277 29814 8.05 --
356.01 0.879 8.36 -1.43 -- 4.04 -- 2.68 -0.138 -- 0.9683 29803 8.38 --
836 1.36 8.14 -0.496 0.77 -- 2.4 -- 1.02 0.239 -- -- -- --
860.3 1.37 8.15 -0.593 0.77 -- -- -- 1.01 0.755 -- -- -- --
354.15 0.876 8.47 -2.02 -- 4.33 -- -- -0.457 -- 1.276 29814 8.86 --
413.53 0.947 8.45 -- 0.416 4.19 -- -- -0.38 1.26 1.75 25738 8.15 --
897.38 1.4 8.13 -0.565 -- -- -- -- 1.02 -- -- -- -- --
869.55 1.38 8.13 -- 0.761 -- -- -- 1.08 0.719 -- -- -- --
411.73 0.945 8.44 -- -- 4.36 -- -- -0.319 -- 1.79 28390 8.93 --
905.8 1.4 8.12 -- -- -- -- -- 1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 333.39 precipitation 0.1 43200 > th dose dependent rect. 3 4
3 334.21 precipitation 0.1 43200 > th dose independent rect. 3 3
4 334.32 precipitation 0.1 43200 < th dose independent rect. 3 3
5 334.32 precipitation 0.1 43200 < th dose dependent rect. 3 3
11 338.02 humidity 80.0 43200 > th dose independent rect. 13 6
16 339.80 humidity 80.0 43200 < th dose independent rect. 13 6
19 340.30 humidity 80.0 43200 < th dose independent rect. 14 4
25 341.68 humidity 90.0 43200 > th dose dependent rect. 7 1
45 344.60 humidity 80.0 43200 < th dose independent rect. 16 1
46 344.73 humidity 80.0 43200 < th dose independent rect. 9 10
50 345.52 humidity 80.0 43200 > th dose independent rect. 9 10
66 347.72 humidity 70.0 43200 > th dose dependent rect. 13 1
70 348.56 humidity 80.0 43200 > th dose independent rect. 16 1
80 349.69 humidity 90.0 43200 > th dose independent rect. 20 1
81 349.98 humidity 80.0 43200 > th dose dependent rect. 18 1
93 351.02 humidity 70.0 43200 > th dose dependent rect. 13 4
102 352.05 humidity 80.0 43200 > th dose dependent rect. 5 15
111 352.71 precipitation 0.1 43200 > th dose dependent rect. 17 3
117 353.11 radiation 1.0 43200 < th dose independent rect. 18 12
128 354.16 radiation 1.0 43200 > th dose independent rect. 18 12
130 354.21 humidity 80.0 43200 > th dose dependent rect. 16 4
164 355.95 humidity 80.0 43200 > th dose dependent sin 22 NA
193 357.65 radiation 1.0 43200 < th dose independent rect. 18 14
233 359.21 radiation 1.0 43200 > th dose independent rect. 18 15
245 359.51 radiation 1.0 43200 > th dose independent rect. 18 17
256 359.74 humidity 90.0 43200 > th dose independent rect. 6 2
282 360.81 precipitation 0.1 43200 > th dose independent rect. 17 3
286 361.03 precipitation 0.1 43200 > th dose dependent rect. 5 1
288 361.11 precipitation 0.1 43200 < th dose independent rect. 17 3
289 361.11 precipitation 0.1 43200 < th dose dependent rect. 17 3
326 362.04 precipitation 0.1 43200 > th dose independent rect. 5 1
356 363.22 precipitation 0.1 43200 > th dose dependent rect. 23 9
367 363.56 precipitation 0.1 43200 < th dose independent rect. 5 1
368 363.56 precipitation 0.1 43200 < th dose dependent rect. 5 1
381 363.92 radiation 1.0 43200 < th dose dependent rect. 18 12
384 363.96 radiation 1.0 43200 < th dose independent sin 10 NA
387 364.01 humidity 90.0 43200 < th dose independent rect. 6 19
394 364.26 radiation 1.0 43200 > th dose independent sin 9 NA
405 364.59 radiation 1.0 43200 > th dose independent rect. 4 7
418 364.91 radiation 1.0 43200 < th dose independent rect. 24 11
419 364.91 radiation 1.0 43200 < th dose independent rect. 22 13
420 364.92 radiation 1.0 43200 < th dose independent rect. 4 7
421 364.92 radiation 1.0 43200 < th dose independent rect. 20 15
522 365.83 humidity 80.0 43200 > th dose independent sin 22 NA
529 366.00 humidity 90.0 43200 < th dose independent rect. 6 4
540 366.35 radiation 1.0 43200 < th dose dependent rect. 20 10
544 366.37 radiation 1.0 43200 < th dose dependent rect. 22 8
551 366.48 humidity 90.0 43200 > th dose independent rect. 6 20
566 366.77 radiation 1.0 43200 < th dose dependent rect. 4 2
577 366.90 radiation 1.0 43200 < th dose dependent rect. 18 8
584 367.06 humidity 90.0 43200 < th dose independent rect. 13 11
597 367.31 humidity 90.0 43200 > th dose independent rect. 5 16
598 367.32 radiation 1.0 43200 < th dose independent rect. 17 8
602 367.36 radiation 1.0 43200 < th dose independent rect. 17 2
603 367.36 radiation 1.0 43200 < th dose independent rect. 17 4
606 367.37 radiation 1.0 43200 < th dose independent rect. 17 6
634 367.69 precipitation 0.1 43200 > th dose dependent rect. 16 1
659 367.92 radiation 1.0 43200 < th dose dependent rect. 18 3
675 368.00 humidity 90.0 43200 < th dose independent rect. 11 13
709 368.40 humidity 90.0 43200 < th dose independent rect. 19 2
722 368.65 radiation 1.0 43200 > th dose independent rect. 17 2
757 369.29 humidity 90.0 43200 < th dose independent rect. 19 5
780 369.72 humidity 90.0 43200 < th dose independent sin 20 NA
803 370.14 humidity 80.0 43200 > th dose independent rect. 10 1
804 370.14 precipitation 0.1 43200 > th dose dependent rect. 13 7
820 370.29 humidity 80.0 43200 < th dose independent rect. 10 1
823 370.32 humidity 80.0 43200 < th dose independent sin 22 NA
857 371.04 precipitation 0.1 43200 > th dose independent rect. 23 9
858 371.08 radiation 1.0 43200 < th dose dependent rect. 18 18
859 371.11 precipitation 0.1 43200 < th dose independent rect. 23 9
860 371.11 precipitation 0.1 43200 < th dose dependent rect. 23 9
892 371.52 humidity 90.0 43200 > th dose independent rect. 19 6
905 371.75 humidity 90.0 43200 > th dose independent rect. 11 14
955 372.70 humidity 90.0 43200 > th dose independent rect. 5 10
956 372.71 humidity 90.0 43200 > th dose independent sin 19 NA
986 372.90 humidity 90.0 43200 < th dose independent rect. 22 1