BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0103400 Os05g0103400|AK066339
(69 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0103400 Conserved hypothetical protein 133 3e-32
Os04g0387600 Conserved hypothetical protein 94 2e-20
Os01g0923200 Conserved hypothetical protein 94 2e-20
Os11g0496500 Similar to AT.I.24-5 protein (Fragment) 92 8e-20
Os02g0508100 Conserved hypothetical protein 92 1e-19
Os07g0298400 Conserved hypothetical protein 87 3e-18
Os02g0508801 85 9e-18
Os05g0103300 Similar to AT.I.24-5 protein (Fragment) 85 9e-18
Os01g0101900 72 8e-14
Os01g0849500 Conserved hypothetical protein 65 1e-11
Os04g0387900 Similar to AT.I.24-6 protein (Fragment) 64 2e-11
>Os05g0103400 Conserved hypothetical protein
Length = 69
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI
Sbjct: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
Query: 61 VIGVHITTD 69
VIGVHITTD
Sbjct: 61 VIGVHITTD 69
>Os04g0387600 Conserved hypothetical protein
Length = 69
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DWGPVV+A VLFVLL+PGLL +PGR EFG+ HTS ++I+VH+++YFAL+T+F+I
Sbjct: 1 MADWGPVVVATVLFVLLTPGLLCTVPGRGRVAEFGSFHTSGLAIIVHAVLYFALLTIFLI 60
Query: 61 VIGVHI 66
IGVHI
Sbjct: 61 AIGVHI 66
>Os01g0923200 Conserved hypothetical protein
Length = 75
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 57/65 (87%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIV 61
+DWGP+++AV+LFV+LSPGLL QLP R VEFGN+ TSA++I+VH++I+F L+T+FV+
Sbjct: 8 TDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVA 67
Query: 62 IGVHI 66
IGVH+
Sbjct: 68 IGVHV 72
>Os11g0496500 Similar to AT.I.24-5 protein (Fragment)
Length = 69
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DWGPV I +VLF+LLSPGLL Q+PG+ VEFGN TS +SI+VHSIIYFALI +F++
Sbjct: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSIIYFALIAIFLL 60
Query: 61 VIGVHI 66
+ VH+
Sbjct: 61 AVNVHM 66
>Os02g0508100 Conserved hypothetical protein
Length = 72
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DWGPVVIA VLFVLL+PGLL QLP V FG +HTS ++++VH++IYFALIT+F+I
Sbjct: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
Query: 61 VIGVHI 66
IGVHI
Sbjct: 64 AIGVHI 69
>Os07g0298400 Conserved hypothetical protein
Length = 78
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIV 61
+DWGP++ AVVLF+LLSPG L QLP R VE GN+ TS +SI+VH+I+YF ++T+ V+
Sbjct: 5 TDWGPIIAAVVLFILLSPGFLFQLPARARVVELGNMGTSGLSILVHAILYFCILTIVVVA 64
Query: 62 IGVHI 66
IGVH+
Sbjct: 65 IGVHV 69
>Os02g0508801
Length = 70
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 52/66 (78%)
Query: 3 DWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIVI 62
DWGPVV+AV+LF+LLSPGLL Q+P R VEFGN+ TS +S++VH++ +F L T+ V+ I
Sbjct: 4 DWGPVVVAVILFILLSPGLLFQVPARTRVVEFGNMCTSGVSVLVHAVFFFVLFTVLVVAI 63
Query: 63 GVHITT 68
G+H+
Sbjct: 64 GIHVRA 69
>Os05g0103300 Similar to AT.I.24-5 protein (Fragment)
Length = 72
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M DWGPV+I+ VLF+LLSPGLL Q+PG+ +EFG TS +SI+VH+I++FAL +F++
Sbjct: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
Query: 61 VIGVHIT 67
IGV I
Sbjct: 61 AIGVQIN 67
>Os01g0101900
Length = 72
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFV-EFGNLHTSAMSIVVHSIIYFALITLFVI 60
DWGPV+IA+VLFVLL+PGLL Q+PG + V EF ++ TS SI VH++++FA +F++
Sbjct: 4 GDWGPVLIALVLFVLLTPGLLCQIPGSNGRVAEFHSMRTSVASIFVHALLFFAFCAIFMV 63
Query: 61 VIGVHI 66
+G+H+
Sbjct: 64 AVGLHL 69
>Os01g0849500 Conserved hypothetical protein
Length = 68
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIY 51
M DW P +IA LF LL PG ++Q+PGR+ V+F N+ TS SIVVH++IY
Sbjct: 1 MKDWAPAIIASALFALLCPGGILQMPGRNRPVDFMNMKTSLASIVVHAVIY 51
>Os04g0387900 Similar to AT.I.24-6 protein (Fragment)
Length = 70
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M DW PVV+ VVLFV+LSPGLLI+LPG H +V+FG+L + S VVH+I++F L + V+
Sbjct: 1 MQDWAPVVVGVVLFVVLSPGLLIELPGTHRWVDFGSLRVTGKSAVVHTIVFFVLFAIVVV 60
Query: 61 VIGVHITT 68
+HI T
Sbjct: 61 ACKLHIYT 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.334 0.148 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,084,699
Number of extensions: 60948
Number of successful extensions: 168
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 149 (62.0 bits)