Os05g0103300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AT.I.24-5 protein (Fragment).
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Os05g0103300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AT.I.24-5 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.65 | 0.457 | 12.2 | -1.47 | 1.39 | 0.947 | -1.42 | -2.4 | -0.477 | 22.6 | 24.22 | 1267 | -- | -- |
| 96.96 | 0.459 | 12.2 | -0.848 | 1.38 | 0.793 | -1.5 | -- | -0.368 | 22.6 | 22.86 | 1182 | -- | -- |
| 102.33 | 0.471 | 12.2 | -1.42 | 1.36 | 0.931 | -- | -2.4 | -0.504 | 22.7 | 22.85 | 1176 | -- | -- |
| 106.45 | 0.481 | 12.1 | -0.769 | 1.39 | 0.712 | -- | -- | -0.342 | 22.7 | 22.26 | 1200 | -- | -- |
| 184.95 | 0.633 | 12.3 | -1.97 | -- | 1.89 | -- | -4.83 | -0.684 | -- | 23.62 | 898 | -- | -- |
| 114.49 | 0.502 | 12.1 | -0.596 | 1.49 | -- | -1.39 | -- | -0.198 | 22.8 | -- | -- | -- | -- |
| 122.49 | 0.518 | 12.1 | -0.541 | 1.49 | -- | -- | -- | -0.195 | 22.9 | -- | -- | -- | -- |
| 196.28 | 0.653 | 12.1 | -0.903 | -- | 1.49 | -- | -- | -0.376 | -- | 23.79 | 897 | -- | -- |
| 120.71 | 0.512 | 12.1 | -- | 1.4 | 0.506 | -- | -- | -0.185 | 22.8 | 24.55 | 1215 | -- | -- |
| 261.16 | 0.755 | 12.1 | -0.508 | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
| 130.2 | 0.534 | 12.1 | -- | 1.49 | -- | -- | -- | -0.135 | 22.9 | -- | -- | -- | -- |
| 216.43 | 0.685 | 12.1 | -- | -- | 1.3 | -- | -- | -0.25 | -- | 24 | 888 | -- | -- |
| 267.97 | 0.764 | 12.1 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 6 | 91.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 7 | 91.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 12 | 91.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 18 | 91.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 29 | 92.21 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 56 | 92.82 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 76 | 93.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 103 | 93.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 130 | 93.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 154 | 93.93 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 161 | 93.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 217 | 94.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 223 | 94.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 247 | 94.75 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 6 |
| 275 | 94.95 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 14 |
| 749 | 96.88 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 839 | 97.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 20 |
| 847 | 97.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 867 | 97.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 892 | 97.19 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 978 | 97.29 | temperature | 20 | 30 | > th | dose dependent | sin | 9 | NA |