BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0103300 Os05g0103300|AK071540
(72 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70 90 3e-19
AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90 88 1e-18
AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70 86 3e-18
AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71 80 2e-16
AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143 80 2e-16
AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71 76 4e-15
AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70 75 7e-15
AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70 72 7e-14
AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70 71 1e-13
AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71 65 7e-12
AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68 59 6e-10
AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68 59 6e-10
AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69 54 1e-08
>AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70
Length = 69
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 58/69 (84%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPVL++ +LF++L+PGLLFQ+PG+ + +EFG FQTS VS++VH++L+F+L +FL+
Sbjct: 1 MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60
Query: 61 AIGVQINLG 69
A+ + I +G
Sbjct: 61 ALKIHIYIG 69
>AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90
Length = 89
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV+++ +LF+LL+PGLLFQIP + R++EFG QTS SILVHTI+FF L IF +
Sbjct: 1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60
Query: 61 AIGVQINLGSS 71
AI + I G+
Sbjct: 61 AIRLHIYTGTR 71
>AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70
Length = 69
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 51/69 (73%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPVLI+ +LF++LSPGLLFQIP R++EFG QTS SILVH I+FF L IF +
Sbjct: 1 MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60
Query: 61 AIGVQINLG 69
AI V I G
Sbjct: 61 AINVHIYSG 69
>AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71
Length = 70
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVAI 62
DWGPVL+S + FI+LSPG+LFQ+PGK + +EFG FQTS SI++HT+LFFA I L+A+
Sbjct: 4 DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63
Query: 63 GVQI 66
+ I
Sbjct: 64 HIHI 67
>AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143
Length = 142
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV ++ LF+LL+PGLL Q+PG+ R++EFG FQTS +S++VHT+++F L I L+
Sbjct: 1 MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60
Query: 61 AIGVQI-NLGSS 71
A+ + I NL S+
Sbjct: 61 ALQIHICNLFST 72
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DW PVL+ VLF++LSPGLLF +PG R ++FG +T+ +I VHT++FFA+ I ++
Sbjct: 74 MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133
Query: 61 AIGVQINLG 69
A+ + I G
Sbjct: 134 ALNLHIYTG 142
>AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71
Length = 70
Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 52/64 (81%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVAI 62
+WGPVL+S LFI+L+PG+LFQ+PGK +++EFG FQTS +I++HT++FFA + ++A+
Sbjct: 4 NWGPVLMSVFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIAL 63
Query: 63 GVQI 66
+ I
Sbjct: 64 HIHI 67
>AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70
Length = 69
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVAI 62
DWGPV+++ LFILLSPGLLFQ+P + R++EFG TS ++ILVH ++F + I ++AI
Sbjct: 4 DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63
Query: 63 GVQIN 67
+ I+
Sbjct: 64 QIHIH 68
>AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70
Length = 69
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFAL 54
DWGPV+++ LFILLSPGLLFQ+P + R++EFG TS +SILVH I++F +
Sbjct: 4 DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCI 55
>AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70
Length = 69
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DW PVL+ VLF++LSPGLLF +PG ++FG +T+ +I VHT++FFA I ++
Sbjct: 1 MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60
Query: 61 AIGVQINLG 69
A+ + I G
Sbjct: 61 AVNLHITTG 69
>AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71
Length = 70
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 51/66 (77%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVAI 62
DWGPV ++ VLF++LSPGLLFQ+P + R++E G TS +SILVH ILFFA+ I ++AI
Sbjct: 5 DWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIAI 64
Query: 63 GVQINL 68
+ I++
Sbjct: 65 QIHIHI 70
>AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68
Length = 67
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M +W PV+++ VLF++LSPGLLFQ+PG ++FGK +TS SIL+H L+F L +F V
Sbjct: 1 MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTV 60
Query: 61 AI 62
I
Sbjct: 61 VI 62
>AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68
Length = 67
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M +W PV+++ VLF++LSPGLLFQ+PG ++FGK +TS SIL+H L+F L +F V
Sbjct: 1 MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTV 60
Query: 61 AI 62
I
Sbjct: 61 VI 62
>AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69
Length = 68
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILF 51
M DW LI+ LF LSPGL+ Q PGK + F +T+V SI VHT+L+
Sbjct: 1 MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLY 51
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.333 0.149 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,447,552
Number of extensions: 42753
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 14
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)