BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0103300 Os05g0103300|AK071540
(72 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0103300 Similar to AT.I.24-5 protein (Fragment) 140 1e-34
Os11g0496500 Similar to AT.I.24-5 protein (Fragment) 99 9e-22
Os04g0387600 Conserved hypothetical protein 87 3e-18
Os02g0508100 Conserved hypothetical protein 87 3e-18
Os05g0103400 Conserved hypothetical protein 85 1e-17
Os01g0923200 Conserved hypothetical protein 85 1e-17
Os02g0508801 83 4e-17
Os01g0101900 80 4e-16
Os07g0298400 Conserved hypothetical protein 77 3e-15
>Os05g0103300 Similar to AT.I.24-5 protein (Fragment)
Length = 72
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV
Sbjct: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
Query: 61 AIGVQINLGSSP 72
AIGVQINLGSSP
Sbjct: 61 AIGVQINLGSSP 72
>Os11g0496500 Similar to AT.I.24-5 protein (Fragment)
Length = 69
Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV I VLFILLSPGLLFQIPGK R++EFG FQTS +SILVH+I++FAL AIFL+
Sbjct: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSIIYFALIAIFLL 60
Query: 61 AIGVQINLG 69
A+ V + LG
Sbjct: 61 AVNVHMYLG 69
>Os04g0387600 Conserved hypothetical protein
Length = 69
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV+++ VLF+LL+PGLL +PG+ R+ EFG F TS ++I+VH +L+FAL IFL+
Sbjct: 1 MADWGPVVVATVLFVLLTPGLLCTVPGRGRVAEFGSFHTSGLAIIVHAVLYFALLTIFLI 60
Query: 61 AIGVQINLG 69
AIGV I G
Sbjct: 61 AIGVHIYAG 69
>Os02g0508100 Conserved hypothetical protein
Length = 72
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV+I+ VLF+LL+PGLLFQ+P R++ FG TS V++LVH +++FAL IFL+
Sbjct: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
Query: 61 AIGVQINLG 69
AIGV I G
Sbjct: 64 AIGVHIYAG 72
>Os05g0103400 Conserved hypothetical protein
Length = 69
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
M DWGPV+I+ VLF+LLSPGLL Q+PG+ +EFG TS +SI+VH+I++FAL +F++
Sbjct: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
Query: 61 AIGVQIN 67
IGV I
Sbjct: 61 VIGVHIT 67
>Os01g0923200 Conserved hypothetical protein
Length = 75
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 52/65 (80%)
Query: 2 QDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVA 61
DWGP++++ +LF++LSPGLLFQ+P + R++EFG TS ++ILVH ++FF L IF+VA
Sbjct: 8 TDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVA 67
Query: 62 IGVQI 66
IGV +
Sbjct: 68 IGVHV 72
>Os02g0508801
Length = 70
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 51/67 (76%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVAI 62
DWGPV+++ +LFILLSPGLLFQ+P + R++EFG TS VS+LVH + FF L + +VAI
Sbjct: 4 DWGPVVVAVILFILLSPGLLFQVPARTRVVEFGNMCTSGVSVLVHAVFFFVLFTVLVVAI 63
Query: 63 GVQINLG 69
G+ + G
Sbjct: 64 GIHVRAG 70
>Os01g0101900
Length = 72
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 3 DWGPVLISWVLFILLSPGLLFQIPG-KCRLIEFGKFQTSVVSILVHTILFFALDAIFLVA 61
DWGPVLI+ VLF+LL+PGLL QIPG R+ EF +TSV SI VH +LFFA AIF+VA
Sbjct: 5 DWGPVLIALVLFVLLTPGLLCQIPGSNGRVAEFHSMRTSVASIFVHALLFFAFCAIFMVA 64
Query: 62 IGVQINLG 69
+G+ + G
Sbjct: 65 VGLHLYAG 72
>Os07g0298400 Conserved hypothetical protein
Length = 78
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 2 QDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLVA 61
DWGP++ + VLFILLSPG LFQ+P + R++E G TS +SILVH IL+F + I +VA
Sbjct: 5 TDWGPIIAAVVLFILLSPGFLFQLPARARVVELGNMGTSGLSILVHAILYFCILTIVVVA 64
Query: 62 IGVQI 66
IGV +
Sbjct: 65 IGVHV 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.333 0.149 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,184,172
Number of extensions: 60454
Number of successful extensions: 139
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 11
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)