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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0923200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0474) R2 : 4.12e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0137 (0.0999) R2dN8 : 5.33e-05 R2N8 : 4.12e-05
σ : 0.893
deviance : 366.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.64 0.882 2.88 -0.324 0.0784 -0.266 0.501 2.62 -0.0996 6.55 60.03 5145 -- --
363.1 0.887 2.9 -0.264 0.0816 -0.368 0.36 -- -0.0499 5.9 71.63 11583 -- --
353.03 0.875 2.88 -0.311 0.0814 -0.248 -- 2.47 -0.101 6.17 60 5359 -- --
362.21 0.886 2.88 -0.235 0.11 -0.372 -- -- 0.0139 4.51 90 11630 -- --
353.44 0.876 2.88 -0.318 -- -0.239 -- 2.46 -0.0945 -- 60 5352 -- --
364.78 0.895 2.89 -0.185 0.104 -- 0.184 -- -0.0357 4.83 -- -- -- --
364.85 0.894 2.89 -0.186 0.106 -- -- -- -0.0367 4.2 -- -- -- --
361.78 0.886 2.87 -0.252 -- -0.377 -- -- -0.00131 -- 97 29049 -- --
363.52 0.888 2.88 -- 0.0998 -0.336 -- -- 0.0262 4.23 91 11651 -- --
365.45 0.893 2.89 -0.182 -- -- -- -- -0.0339 -- -- -- -- --
365.76 0.895 2.89 -- 0.102 -- -- -- -0.016 4.24 -- -- -- --
364.05 0.889 2.88 -- -- -0.338 -- -- 0.0267 -- 91 11724 -- --
366.33 0.893 2.89 -- -- -- -- -- -0.0137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.82 temperature 20.0 30 < th dose independent rect. 7 1
4 338.82 temperature 20.0 30 < th dose dependent rect. 7 1
13 341.84 radiation 1.0 30 < th dose dependent rect. 7 1
23 343.46 precipitation 0.1 90 > th dose independent rect. 5 1
24 343.46 precipitation 0.1 90 > th dose dependent rect. 5 1
26 343.85 humidity 90.0 90 > th dose dependent rect. 16 2
27 343.86 humidity 90.0 90 > th dose independent rect. 16 1
29 343.93 temperature 25.0 90 < th dose dependent rect. 16 3
30 343.99 temperature 20.0 90 < th dose independent rect. 16 2
32 344.00 temperature 20.0 90 < th dose dependent rect. 16 1
33 344.01 temperature 20.0 10 < th dose independent rect. 17 1
41 344.01 temperature 20.0 10 < th dose dependent rect. 17 1
93 346.85 wind 1.0 10 > th dose independent rect. 4 16
106 347.24 precipitation 0.1 90 > th dose independent rect. 13 1
109 347.24 precipitation 0.1 90 > th dose dependent rect. 13 1
112 347.34 humidity 90.0 10 < th dose dependent rect. 3 2
113 347.36 radiation 10.0 10 < th dose dependent rect. 14 1
115 347.48 radiation 10.0 30 < th dose independent rect. 13 2
117 347.48 humidity 90.0 90 > th dose dependent rect. 5 13
133 347.68 wind 3.0 90 < th dose independent rect. 16 1
143 347.76 wind 1.0 10 < th dose dependent rect. 1 1
148 347.84 humidity 80.0 90 < th dose independent rect. 2 2
151 347.85 humidity 80.0 90 < th dose dependent rect. 2 2
160 348.00 wind 3.0 90 < th dose independent rect. 4 14
162 348.03 humidity 80.0 10 < th dose independent rect. 3 1
206 348.65 humidity 90.0 90 > th dose independent rect. 5 3
210 348.70 humidity 90.0 30 > th dose dependent rect. 6 4
213 348.73 humidity 90.0 30 > th dose dependent rect. 6 2
225 348.98 wind 5.0 10 < th dose independent rect. 15 5
233 349.06 radiation 1.0 90 < th dose independent rect. 6 1
234 349.08 wind 3.0 90 > th dose independent rect. 20 21
245 349.27 radiation 1.0 90 < th dose dependent rect. 6 13
258 349.43 temperature 20.0 90 < th dose dependent rect. 12 6
260 349.47 wind 7.0 1440 < th dose independent rect. 6 1
262 349.47 temperature 10.0 1440 > th dose independent rect. 6 1
265 349.47 temperature 30.0 1440 < th dose independent rect. 6 1
269 349.47 humidity 50.0 1440 > th dose independent rect. 6 1
274 349.47 atmosphere 995.0 1440 > th dose independent rect. 6 1
275 349.47 atmosphere 1015.0 1440 < th dose independent rect. 6 1
276 349.47 radiation 40.0 1440 < th dose independent rect. 6 1
280 349.47 temperature 10.0 1440 > th dose independent rect. 7 23
285 349.49 atmosphere 1010.0 90 < th dose dependent rect. 4 5
305 349.72 humidity 70.0 4320 > th dose independent rect. 10 1
313 349.78 atmosphere 1005.0 90 < th dose independent rect. 4 5
314 349.79 temperature 15.0 4320 > th dose independent rect. 21 1
318 349.84 atmosphere 1010.0 270 < th dose dependent rect. 4 2
335 349.94 radiation 1.0 30 < th dose independent rect. 20 11
341 349.96 atmosphere 1005.0 270 < th dose independent rect. 4 2
343 349.97 wind 9.0 90 < th dose dependent rect. 4 16
348 350.02 wind 1.0 10 > th dose independent rect. 5 1
351 350.05 humidity 70.0 4320 < th dose independent rect. 10 2
354 350.06 wind 7.0 90 < th dose dependent rect. 15 4
355 350.07 temperature 20.0 30 > th dose dependent rect. 5 1
366 350.15 humidity 70.0 4320 < th dose independent rect. 7 5
369 350.16 wind 1.0 270 < th dose dependent rect. 2 1
373 350.17 wind 5.0 90 < th dose independent rect. 15 4
374 350.17 atmosphere 1005.0 10 < th dose independent rect. 5 4
393 350.24 temperature 15.0 4320 < th dose independent rect. 21 1
398 350.25 humidity 70.0 4320 > th dose independent rect. 7 5
406 350.29 temperature 10.0 1440 > th dose independent rect. 21 8
409 350.29 temperature 30.0 1440 < th dose independent rect. 21 8
413 350.29 humidity 50.0 1440 > th dose independent rect. 21 8
419 350.29 atmosphere 995.0 1440 > th dose independent rect. 21 8
420 350.29 radiation 20.0 1440 < th dose independent rect. 21 8
432 350.29 temperature 10.0 1440 > th dose independent rect. 5 16
435 350.30 temperature 25.0 10 > th dose independent rect. 5 1
439 350.33 humidity 70.0 4320 > th dose independent rect. 5 7
444 350.34 humidity 70.0 4320 > th dose independent rect. 24 12
455 350.42 radiation 1.0 10 < th dose dependent rect. 20 11
462 350.45 radiation 10.0 10 < th dose dependent rect. 20 19
465 350.48 humidity 80.0 10 < th dose dependent rect. 20 1
502 350.66 humidity 90.0 90 > th dose independent rect. 5 13
511 350.70 wind 9.0 90 < th dose dependent rect. 15 20
513 350.73 temperature 15.0 4320 < th dose dependent rect. 21 1
532 350.85 radiation 1.0 90 < th dose independent rect. 6 13
535 350.89 wind 1.0 90 > th dose independent rect. 4 2
541 350.92 precipitation 0.1 90 > th dose dependent rect. 5 10
546 350.94 wind 9.0 90 < th dose independent rect. 4 16
563 350.97 wind 9.0 10 < th dose dependent rect. 15 5
567 350.99 humidity 80.0 4320 < th dose dependent rect. 10 1
641 351.18 temperature 25.0 30 < th dose dependent rect. 12 2
643 351.19 wind 9.0 10 < th dose independent rect. 4 16
644 351.19 wind 3.0 90 < th dose dependent rect. 17 1
694 351.40 precipitation 0.1 90 < th dose independent rect. 4 16
695 351.40 precipitation 0.1 90 < th dose dependent rect. 4 16
702 351.44 radiation 1.0 90 < th dose independent rect. 4 16
712 351.49 wind 7.0 10 < th dose independent rect. 17 3
717 351.52 wind 1.0 10 < th dose independent rect. 1 1
721 351.56 humidity 70.0 4320 < th dose independent sin 7 NA
728 351.61 humidity 70.0 4320 > th dose independent sin 7 NA
732 351.64 humidity 70.0 90 > th dose independent rect. 16 4
741 351.65 atmosphere 1015.0 30 < th dose dependent rect. 4 16
744 351.67 precipitation 0.1 90 > th dose independent rect. 5 10
747 351.68 atmosphere 995.0 90 > th dose independent rect. 4 16
758 351.72 humidity 50.0 4320 > th dose dependent rect. 10 1
769 351.76 temperature 10.0 90 > th dose independent rect. 20 8
770 351.76 temperature 30.0 90 < th dose independent rect. 20 8
771 351.76 humidity 50.0 90 > th dose independent rect. 20 8
774 351.76 atmosphere 995.0 90 > th dose independent rect. 20 8
775 351.76 radiation 1.0 90 < th dose independent rect. 20 8
780 351.76 temperature 10.0 90 > th dose independent rect. 4 16
781 351.76 atmosphere 1015.0 90 < th dose independent rect. 4 16
782 351.76 wind 5.0 90 < th dose independent rect. 14 21
784 351.76 radiation 1.0 90 < th dose dependent rect. 20 8
789 351.77 humidity 50.0 90 > th dose independent rect. 4 16
795 351.79 wind 9.0 90 < th dose independent rect. 20 8
856 352.00 precipitation 0.1 90 < th dose independent rect. 20 8
858 352.00 precipitation 0.1 90 < th dose dependent rect. 20 8
862 352.02 humidity 80.0 30 < th dose dependent rect. 18 2
895 352.15 temperature 15.0 4320 > th dose independent rect. 7 6
913 352.22 wind 3.0 90 < th dose independent rect. 4 7
915 352.22 wind 3.0 90 < th dose independent rect. 1 17
950 352.32 wind 3.0 90 < th dose independent sin 3 NA
954 352.33 humidity 70.0 4320 < th dose dependent rect. 7 6
999 352.38 wind 3.0 90 > th dose independent sin 3 NA