BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0923200 Os01g0923200|AK060288
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70 109 3e-25
AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70 104 1e-23
AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90 102 4e-23
AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70 96 3e-21
AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70 92 7e-20
AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71 84 1e-17
AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71 83 3e-17
AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71 82 8e-17
AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143 80 2e-16
AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70 75 1e-14
AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68 62 8e-11
AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68 62 8e-11
AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69 52 5e-08
>AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70
Length = 69
Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 60/67 (89%)
Query: 7 STDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVV 66
STDWGP+IVAV LF++LSPGLLFQLPAR RVVEFGNM TS IAILVHA I+FC+LTI V+
Sbjct: 2 STDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVI 61
Query: 67 AIGVHVY 73
AI +H++
Sbjct: 62 AIQIHIH 68
>AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70
Length = 69
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 58/67 (86%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DWGP+++AVILFVVLSPGLLFQ+PA RVVEFGNM TS +ILVHA+IFF L+TIF +AI
Sbjct: 3 DWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIAI 62
Query: 69 GVHVYAA 75
VH+Y+
Sbjct: 63 NVHIYSG 69
>AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90
Length = 89
Score = 102 bits (254), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 57/67 (85%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DWGP++VAVILFV+L+PGLLFQ+PAR RVVEFGNM TS +ILVH +IFF L+TIF +AI
Sbjct: 3 DWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIAI 62
Query: 69 GVHVYAA 75
+H+Y
Sbjct: 63 RLHIYTG 69
>AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70
Length = 69
Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 52/56 (92%)
Query: 7 STDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLT 62
S DWGP+IVAV LF++LSPGLLFQLPAR RV+EFGNM+TS I+ILVHA+I+FC+LT
Sbjct: 2 SADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILT 57
>AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70
Length = 69
Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 57/66 (86%)
Query: 8 TDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVA 67
+DWGP++V VILFV+L+PGLLFQLP R + VEFGN TSA++++VH++++F L+ +F++A
Sbjct: 2 SDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLA 61
Query: 68 IGVHVY 73
+ +H+Y
Sbjct: 62 LKIHIY 67
>AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71
Length = 70
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 54/67 (80%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DWGP++++VI F+VLSPG+LFQLP +++ VEFG TS +I++H ++FF +TI ++A+
Sbjct: 4 DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63
Query: 69 GVHVYAA 75
+H+YAA
Sbjct: 64 HIHIYAA 70
>AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71
Length = 70
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 57/68 (83%)
Query: 6 ASTDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFV 65
DWGP+ VAV+LFVVLSPGLLFQLPAR RV+E GNM TS I+ILVHA++FF ++TI V
Sbjct: 2 GGADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILV 61
Query: 66 VAIGVHVY 73
+AI +H++
Sbjct: 62 IAIQIHIH 69
>AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71
Length = 70
Score = 81.6 bits (200), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 53/67 (79%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
+WGP++++V LF+VL+PG+LFQLP + +VVEFG TS AI++H +IFF +T+ ++A+
Sbjct: 4 NWGPVLMSVFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIAL 63
Query: 69 GVHVYAA 75
+H+Y A
Sbjct: 64 HIHIYVA 70
>AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143
Length = 142
Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DW P++V V+LFV+LSPGLLF LP R V+FG + T+ AI VH +IFF + TI ++A+
Sbjct: 76 DWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILILAL 135
Query: 69 GVHVYAA 75
+H+Y
Sbjct: 136 NLHIYTG 142
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DWGP+ VAV LFV+L+PGLL Q+P R RVVEFG TS ++++VH +I+F L+ I ++A+
Sbjct: 3 DWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLLAL 62
Query: 69 GVHV 72
+H+
Sbjct: 63 QIHI 66
>AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70
Length = 69
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DW P++V V+LFV+LSPGLLF LP ++FG M T+ AI VH +IFF TI ++A+
Sbjct: 3 DWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILILAV 62
Query: 69 GVHV 72
+H+
Sbjct: 63 NLHI 66
>AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68
Length = 67
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 8 TDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVA 67
T+W P++VA +LFVVLSPGLLFQ+P V+FG M TS +IL+HA ++F L+T+F V
Sbjct: 2 TEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTVV 61
Query: 68 I 68
I
Sbjct: 62 I 62
>AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68
Length = 67
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 8 TDWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVA 67
T+W P++VA +LFVVLSPGLLFQ+P V+FG M TS +IL+HA ++F L+T+F V
Sbjct: 2 TEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTVV 61
Query: 68 I 68
I
Sbjct: 62 I 62
>AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69
Length = 68
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
DW ++A LF LSPGL+ Q P + V F NM T+ +I VH V++ L +F+V +
Sbjct: 3 DWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLVVL 62
Query: 69 GVHVYA 74
VHVYA
Sbjct: 63 NVHVYA 68
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.335 0.144 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,326,835
Number of extensions: 35783
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 14
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)