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Os04g0387900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AT.I.24-6 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0286) R2 : 0.495
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.16 (0.0573) R2dE : 0.438 R2E : 0.414
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.533 (0.0603) R2dN8 : 0.0811 R2N8 : 0.0564
σ : 0.538
deviance : 133.39
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.54
memory length : 131
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.09 0.497 11.3 0.339 0.813 0.733 -0.206 -0.819 0.434 2.9 19.97 10 -- --
114.68 0.499 11.3 0.384 0.856 0.667 -0.612 -- 0.437 2.46 19.98 9 -- --
112.18 0.493 11.3 0.335 0.807 0.744 -- -0.915 0.433 2.96 19.97 9 -- --
116.63 0.503 11.3 0.383 0.812 0.746 -- -- 0.449 2.95 19.97 9 -- --
129.22 0.529 11.2 0.497 -- 1.18 -- -1.02 0.548 -- 15.41 68 -- --
133.26 0.541 11.3 0.358 1.32 -- -0.968 -- 0.454 1.76 -- -- -- --
136.9 0.548 11.3 0.389 1.33 -- -- -- 0.459 1.85 -- -- -- --
133.71 0.539 11.3 0.518 -- 1.2 -- -- 0.551 -- 15.5 75 -- --
120.82 0.512 11.3 -- 0.801 0.728 -- -- 0.439 2.92 19.98 9 -- --
243.22 0.729 11.3 0.443 -- -- -- -- 0.489 -- -- -- -- --
140.88 0.555 11.3 -- 1.33 -- -- -- 0.416 1.85 -- -- -- --
133.39 0.538 11.3 -- -- 1.16 -- -- 0.533 -- 9.54 131 -- --
248.4 0.736 11.3 -- -- -- -- -- 0.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.33 radiation 40.0 90 < th dose dependent rect. 3 16
2 105.66 radiation 20.0 90 < th dose independent rect. 3 16
3 105.70 radiation 20.0 10 < th dose independent rect. 4 16
10 106.51 radiation 40.0 270 < th dose independent rect. 1 18
12 106.53 temperature 10.0 270 > th dose dependent rect. 1 8
15 106.77 radiation 30.0 270 < th dose independent rect. 1 8
21 107.02 precipitation 0.1 270 < th dose independent rect. 15 16
22 107.02 precipitation 0.1 270 < th dose dependent rect. 15 16
23 107.07 radiation 40.0 270 < th dose dependent rect. 1 9
30 107.22 precipitation 0.1 270 < th dose independent rect. 2 17
31 107.22 precipitation 0.1 270 < th dose dependent rect. 2 17
35 107.29 precipitation 0.1 270 < th dose independent rect. 1 8
37 107.29 precipitation 0.1 270 < th dose dependent rect. 1 8
40 107.48 wind 7.0 270 < th dose independent rect. 1 8
45 107.70 humidity 60.0 270 > th dose independent rect. 1 8
47 107.76 radiation 40.0 270 < th dose dependent rect. 1 18
50 107.83 wind 7.0 270 < th dose independent rect. 15 16
59 107.91 precipitation 0.1 270 < th dose independent rect. 7 8
61 107.91 precipitation 0.1 270 < th dose dependent rect. 7 8
64 107.97 temperature 10.0 270 > th dose independent rect. 1 8
67 107.97 atmosphere 995.0 270 > th dose independent rect. 1 8
68 107.97 atmosphere 1015.0 270 < th dose independent rect. 1 8
69 107.97 temperature 10.0 270 > th dose independent rect. 9 16
70 107.98 wind 9.0 270 < th dose independent rect. 9 16
74 108.03 wind 9.0 270 < th dose independent rect. 7 8
79 108.10 temperature 30.0 270 < th dose independent rect. 1 8
80 108.10 radiation 40.0 270 < th dose independent rect. 15 16
86 108.20 radiation 10.0 90 > th dose independent rect. 9 7
90 108.22 temperature 10.0 270 > th dose independent rect. 19 7
91 108.22 temperature 30.0 270 < th dose independent rect. 19 7
92 108.22 humidity 50.0 270 > th dose independent rect. 19 7
93 108.22 atmosphere 995.0 270 > th dose independent rect. 19 7
94 108.22 radiation 1.0 270 < th dose independent rect. 19 7
100 108.22 temperature 10.0 270 > th dose independent rect. 2 17
101 108.22 atmosphere 1015.0 270 < th dose independent rect. 2 17
102 108.22 radiation 1.0 270 < th dose dependent rect. 19 7
108 108.24 temperature 10.0 270 > th dose independent rect. 7 8
109 108.24 atmosphere 1015.0 270 < th dose independent rect. 7 8
110 108.24 temperature 10.0 270 > th dose independent rect. 15 16
127 108.38 wind 9.0 270 < th dose independent rect. 19 7
136 108.52 radiation 1.0 270 < th dose dependent rect. 17 9
140 108.56 radiation 40.0 90 < th dose dependent rect. 16 17
146 108.75 atmosphere 995.0 270 > th dose independent rect. 7 8
147 108.76 humidity 50.0 270 > th dose dependent rect. 19 7
156 108.87 radiation 20.0 30 < th dose dependent sin 22 NA
162 108.94 wind 9.0 270 < th dose independent rect. 2 17
166 109.00 precipitation 0.1 270 < th dose independent rect. 19 7
169 109.00 precipitation 0.1 270 < th dose dependent rect. 19 7
173 109.03 radiation 1.0 270 < th dose dependent rect. 5 21
190 109.17 radiation 40.0 90 < th dose dependent rect. 15 20
196 109.22 temperature 10.0 270 > th dose dependent rect. 15 16
200 109.29 precipitation 0.1 270 < th dose independent rect. 9 16
201 109.29 precipitation 0.1 270 < th dose dependent rect. 9 16
203 109.31 radiation 1.0 270 > th dose independent rect. 7 8
221 109.44 wind 1.0 270 > th dose independent rect. 19 7
226 109.46 radiation 20.0 90 < th dose independent rect. 16 17
247 109.60 radiation 40.0 90 < th dose dependent rect. 13 22
260 109.68 humidity 50.0 270 > th dose dependent rect. 1 8
287 109.89 atmosphere 995.0 270 > th dose independent rect. 2 17
310 110.05 humidity 50.0 270 > th dose independent rect. 9 16
314 110.07 wind 9.0 270 < th dose dependent rect. 1 8
318 110.10 radiation 40.0 90 < th dose independent rect. 3 8
338 110.18 radiation 20.0 10 < th dose independent rect. 16 18
353 110.23 radiation 30.0 90 < th dose dependent sin 1 NA
390 110.33 radiation 40.0 10 < th dose dependent rect. 16 18
392 110.34 atmosphere 995.0 270 > th dose independent rect. 15 16
398 110.37 radiation 20.0 10 < th dose independent rect. 2 23
423 110.46 radiation 1.0 270 < th dose dependent sin 14 NA
429 110.48 temperature 10.0 270 > th dose dependent rect. 14 6
432 110.49 wind 1.0 270 > th dose independent rect. 13 8
459 110.59 radiation 10.0 30 < th dose independent sin 22 NA
465 110.60 radiation 20.0 10 < th dose independent rect. 16 22
471 110.64 precipitation 0.1 90 < th dose independent rect. 3 6
472 110.64 atmosphere 1015.0 270 < th dose independent rect. 15 16
473 110.64 precipitation 0.1 90 < th dose dependent rect. 3 6
483 110.68 wind 5.0 90 < th dose independent rect. 3 6
484 110.68 atmosphere 995.0 270 > th dose independent rect. 9 16
493 110.72 wind 9.0 90 < th dose dependent rect. 3 6
500 110.74 temperature 10.0 270 > th dose dependent rect. 15 4
505 110.77 atmosphere 1015.0 270 < th dose independent rect. 13 8
508 110.78 precipitation 0.1 270 < th dose independent rect. 13 8
511 110.78 precipitation 0.1 270 < th dose dependent rect. 13 8
547 110.88 precipitation 0.1 270 < th dose independent rect. 14 6
548 110.88 precipitation 0.1 270 < th dose dependent rect. 14 6
567 110.98 radiation 40.0 270 < th dose independent rect. 13 7
575 111.02 wind 9.0 90 < th dose independent rect. 9 18
587 111.06 radiation 40.0 90 < th dose dependent rect. 11 23
606 111.09 temperature 10.0 270 > th dose independent rect. 13 8
608 111.09 temperature 10.0 270 > th dose independent rect. 21 16
609 111.09 atmosphere 995.0 270 > th dose independent rect. 21 16
612 111.10 wind 9.0 270 < th dose independent rect. 21 16
616 111.11 humidity 60.0 90 > th dose independent rect. 3 6
636 111.17 temperature 10.0 90 > th dose independent rect. 3 6
639 111.17 atmosphere 995.0 90 > th dose independent rect. 3 6
640 111.17 atmosphere 1015.0 90 < th dose independent rect. 3 6
656 111.24 radiation 20.0 90 < th dose independent rect. 13 22
660 111.26 wind 1.0 270 > th dose independent rect. 2 17
688 111.37 wind 9.0 270 < th dose independent rect. 20 18
696 111.39 radiation 40.0 90 < th dose dependent rect. 13 20
697 111.40 atmosphere 1010.0 270 < th dose independent rect. 14 6
698 111.41 temperature 10.0 270 > th dose independent rect. 14 6
704 111.41 temperature 10.0 270 > th dose independent rect. 20 18
705 111.41 atmosphere 995.0 270 > th dose independent rect. 20 18
706 111.41 humidity 50.0 90 > th dose dependent rect. 3 8
757 111.55 atmosphere 1005.0 90 > th dose independent rect. 3 6
773 111.58 radiation 20.0 90 < th dose independent rect. 15 20
774 111.59 wind 9.0 270 < th dose independent rect. 13 8
777 111.60 temperature 30.0 90 < th dose independent rect. 3 6
780 111.60 wind 1.0 270 > th dose independent rect. 7 8
790 111.62 humidity 80.0 10 < th dose independent rect. 9 7
791 111.62 humidity 50.0 270 > th dose independent rect. 7 8
801 111.64 wind 9.0 270 < th dose independent rect. 14 6
837 111.74 wind 1.0 270 > th dose independent rect. 9 16
841 111.75 radiation 1.0 270 < th dose independent rect. 6 20
868 111.81 precipitation 0.1 270 < th dose independent rect. 21 16
871 111.81 precipitation 0.1 270 < th dose dependent rect. 21 16
878 111.83 precipitation 0.1 90 < th dose independent rect. 9 7
881 111.83 precipitation 0.1 90 < th dose dependent rect. 9 7
884 111.84 precipitation 0.1 270 < th dose independent rect. 20 18
889 111.84 precipitation 0.1 270 < th dose dependent rect. 20 18
926 111.89 wind 9.0 90 < th dose independent rect. 9 7
936 111.91 radiation 20.0 10 < th dose dependent rect. 8 14
957 111.95 temperature 10.0 90 > th dose independent rect. 9 7
958 111.95 atmosphere 1015.0 90 < th dose independent rect. 9 7
973 111.96 atmosphere 995.0 90 > th dose dependent rect. 2 7