BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0593700 Os04g0593700|AK069584
(461 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0593700 RWD domain containing protein 921 0.0
Os04g0593800 Nucleic acid-binding, OB-fold domain containin... 331 7e-91
Os04g0594000 RWD domain containing protein 330 1e-90
Os02g0694700 RWD domain containing protein 236 2e-62
Os04g0593600 Zinc finger, FYVE/PHD-type domain containing p... 110 2e-24
AK110331 79 7e-15
Os08g0540300 Zinc finger, RING-type domain containing protein 77 3e-14
Os09g0513800 Similar to ARIADNE-like protein 72 1e-12
Os09g0419500 Zinc finger, RING-type domain containing protein 71 2e-12
Os09g0435200 69 7e-12
Os08g0451800 Zinc finger, RING-type domain containing protein 69 9e-12
Os03g0233500 UBA-like domain containing protein 66 4e-11
>Os04g0593700 RWD domain containing protein
Length = 461
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/461 (96%), Positives = 445/461 (96%)
Query: 1 METPRHDDESHGGAAATALLHEMLLRARRDGEEPELSDEQLRSNDQLQEDEMLALEAIYG 60
METPRHDDESHGGAAATALLHEMLLRARRDGEEPELSDEQLRSNDQLQEDEMLALEAIYG
Sbjct: 1 METPRHDDESHGGAAATALLHEMLLRARRDGEEPELSDEQLRSNDQLQEDEMLALEAIYG 60
Query: 61 DNISILSAKDGLRCFQVHVHCEIPDGISVSAELSRDDNRDQNSRFFDTFSVQHLAPISFT 120
DNISILSAKDGLRCFQVHVHCEIPDGISVSAELSRDDNRDQNSRFFDTFSVQHLAPISFT
Sbjct: 61 DNISILSAKDGLRCFQVHVHCEIPDGISVSAELSRDDNRDQNSRFFDTFSVQHLAPISFT 120
Query: 121 CLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQLGLEVVYGWVQWLQSSALS 180
CLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQLGLEVVYGWVQWLQSSALS
Sbjct: 121 CLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQLGLEVVYGWVQWLQSSALS 180
Query: 181 HLGFNDGIVIQQPDSMMGPXXXXXXXXXXXXXXXXQWLISYNEEQCHESFLIGLHDCMIC 240
HLGFNDGIVIQQPDSMMGP QWLISYNEEQCHESFLIGLHDCMIC
Sbjct: 181 HLGFNDGIVIQQPDSMMGPVDVRVVAEIVSVESAVQWLISYNEEQCHESFLIGLHDCMIC 240
Query: 241 FTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLG 300
FTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLG
Sbjct: 241 FTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLG 300
Query: 301 DKDFERWERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSKCFFSFCTRCRYLRHIG 360
DKDFERWERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSKCFFSFCTRCRYLRHIG
Sbjct: 301 DKDFERWERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSKCFFSFCTRCRYLRHIG 360
Query: 361 ERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRV 420
ERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRV
Sbjct: 361 ERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRV 420
Query: 421 SGCDHMLCSNCRQPFCYSCGKPLHRGHSSAELIRRIRQEKH 461
SGCDHMLCSNCRQPFCYSCGKPLHRGHSSAELIRRIRQEKH
Sbjct: 421 SGCDHMLCSNCRQPFCYSCGKPLHRGHSSAELIRRIRQEKH 461
>Os04g0593800 Nucleic acid-binding, OB-fold domain containing protein
Length = 305
Score = 331 bits (848), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 160/201 (79%), Positives = 173/201 (86%)
Query: 249 FIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLGDKDFERWE 308
F+ GHYFC+RCMETYSRMHV EGTVLKLLCPNDKCG IIPPSLLKR+LGD DFERWE
Sbjct: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
Query: 309 RLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSKCFFSFCTRCRYLRHIGERCISPEE 368
RL LQKTLDSMSD+AYCPRC ACLEDEENNAQC KCFFSFC RCR RHIGE+C++ EE
Sbjct: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
Query: 369 KLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRVSGCDHMLC 428
KL SLQDR V LSK +FA ++NL+NEISSIKEVLRSSV CPHCGTAISRVSGC+HMLC
Sbjct: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
Query: 429 SNCRQPFCYSCGKPLHRGHSS 449
SNCRQ FCY CGK + GHSS
Sbjct: 181 SNCRQSFCYGCGKAENHGHSS 201
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 242/401 (60%), Gaps = 25/401 (6%)
Query: 58 IYGDNISILSAKDGLRCFQVHVHCEIPDGISVSAELSRDDNR---------------DQN 102
I D I K GL F++++H ++ DG V A+LS + + D+
Sbjct: 7 IRDDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIEGHGDEP 66
Query: 103 SRFFDTFSVQHLAPISFTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQL 162
F T + ++L P+ TCL+P SYPS PYFT++ +W+D VS LC MLDTIW++
Sbjct: 67 EDFSYTCNFEYLPPLVLTCLLPLSYPSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELP 126
Query: 163 GLEVVYGWVQWLQSSALSHLGFNDGIVIQQPDSMMGPXXXXXXXXXXXXXXXXQWLISYN 222
G EVVY WV+ L++S+ S+L F DG + PD+ M ++SY+
Sbjct: 127 GQEVVYRWVESLRNSSRSYLWF-DGKITLGPDTPMQKGDNRAISRSLSLESVIPSMLSYS 185
Query: 223 EEQCHESFLIGLHDCMICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCP 282
++ +++FL LH CMIC ++ G +FI+LPC H FC +C+ T RMHV EG+V +L+CP
Sbjct: 186 SKKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCP 245
Query: 283 NDKCGDIIPPSLLKRMLGDKDFERWERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQC 342
+ KC IPP +LKR+L + +FERW+RLTL+K LDSMSDV YCPRCV CLEDE+NNAQC
Sbjct: 246 DTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLEDEDNNAQC 305
Query: 343 SKCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKE 402
KC F FC+ C+ H +C++PEEKL R+ + G + R +A EI +IK
Sbjct: 306 PKCSFFFCSFCKEPCHPRRQCLTPEEKL--------QRRQASGRMSER-EVAQEILNIKA 356
Query: 403 VLRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPL 443
+ LCP C AIS+ +GC+ M+C NC Q FC+ CGK +
Sbjct: 357 LYNDVRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAI 397
>Os02g0694700 RWD domain containing protein
Length = 415
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 183/316 (57%), Gaps = 12/316 (3%)
Query: 8 DESHGGAAATALLHEMLLRARRDGEEPELSDEQLRSNDQLQEDEMLALEAIYGDNISILS 67
DE+ G + L A E+ ELS+EQ+++N+Q QEDE+LAL+AIYGD++ I
Sbjct: 14 DEADAGNWDAGVETAARLEAMVHAED-ELSEEQIQANNQTQEDELLALQAIYGDDLVIFD 72
Query: 68 AKDGLRCFQVHVHCEIPDGISVSAEL---SRDDNRDQNS------RFFDTFSVQHLAPIS 118
KDGLR FQ+ +H ++ I V + R + +N R S+QHL P+
Sbjct: 73 NKDGLRFFQISLHYQLAGDIRVYLNVCPNGRTETGAENDDDDDSDRLLYACSLQHLPPVV 132
Query: 119 FTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQ-LGLEVVYGWVQWLQSS 177
CL+P YPSH APYF ++++WLD +VSS C +LD IW++Q G EVVY WV WL +S
Sbjct: 133 LACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPAGQEVVYKWVDWLSTS 192
Query: 178 ALSHLGFNDGIVIQQPDSMMGPXXXXXXXXXXXXXXXXQWLISYNEEQCHESFLIGLHDC 237
+ + +D IV PD+ + Y++E+ HE F +H+C
Sbjct: 193 SWFCIASDDQIVFG-PDADSAGGDDRAIGRSCSLDSMIPLIQRYSKERSHEIFARRIHEC 251
Query: 238 MICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKR 297
+C +E G +FI+LPC H FC +CMET R+HV EG+V +L CP+ C +PP+LL+
Sbjct: 252 GVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSCRRPLPPALLRG 311
Query: 298 MLGDKDFERWERLTLQ 313
+LGD ++ RWE L L+
Sbjct: 312 LLGDGEYARWESLVLR 327
>Os04g0593600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 211
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 330 TACLEDEENNAQCSKCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFAR 389
TACLED +N A CS C FSFCT CR RH+G++C+SPEEKLL L+ R + +L
Sbjct: 1 TACLEDGDNEAVCSSCLFSFCTLCRDRRHVGDKCMSPEEKLLILEKRQEAGKLQ----GD 56
Query: 390 RINLANEISSIKEVLRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPL 443
+ E+ SIK +++ S +CP C AI ++ GC+ M CSNC Q FCY C +
Sbjct: 57 QHKFLEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAI 110
>AK110331
Length = 674
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 237 CMICFTE-RAGIDFIKLPCGHYFCQRCMETYSRMHV-----AEGTVLKLLCPNDKCGDII 290
C +CF + + G+ F + CGH FC C + Y + V A G L CP KC +++
Sbjct: 328 CGVCFDDVKEGLTFA-MKCGHRFCIPCWKDYLKSSVDSGASAGGNCLSSTCPGFKCKELL 386
Query: 291 PPSLLKRMLGDKDFERWERLTLQKTLDSMSDVAYCPR--CVTACLEDEENNAQCSKCFFS 348
+ + + + F+++ + L +D + +CP C + C
Sbjct: 387 GEQIYEMLCDEASFKKYRDVQLLSFVDDNESITWCPGKGCGNVIAFSKRKKTVYCTCGQR 446
Query: 349 FCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSV 408
FC +C+ H C + L R+K Q NL ++ +L +
Sbjct: 447 FCFKCKAEAHAPTTCKEAADWLA----RDKGSQ----------NLDSKF-----LLEETK 487
Query: 409 LCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPLH 444
CPHCG + + GC +M C+ C++ +C+ CGK H
Sbjct: 488 PCPHCGVRVKKDGGCMYMSCTQCKKAWCWQCGKSDH 523
>Os08g0540300 Zinc finger, RING-type domain containing protein
Length = 607
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 27/209 (12%)
Query: 237 CMICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEG-TVLKLLCPNDKCGDIIPPSLL 295
C ICF + C H++C C E Y +++G L L CP+ CG ++ +++
Sbjct: 155 CGICFEGYSSDVMSSADCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMI 214
Query: 296 KRMLGDKDFERWERLTLQKTLDSMSDVAYCP----RCVTACLEDEENNAQCSKCFFSFCT 351
++ D D R+ R L+ ++ +CP C + D + C+ C FSFC
Sbjct: 215 NKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSCN-CKFSFCW 273
Query: 352 RCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCP 411
C H C + +L +N E ++ +L +S CP
Sbjct: 274 NCTEEAHRPVNCETVSRWIL----KNSA----------------ESENMNWILANSKPCP 313
Query: 412 HCGTAISRVSGCDHMLCS-NCRQPFCYSC 439
C I + GC HM C+ C+ FC+ C
Sbjct: 314 KCKRPIEKNQGCMHMTCTPPCKFEFCWLC 342
>Os09g0513800 Similar to ARIADNE-like protein
Length = 516
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 237 CMICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGT-VLKLLCPNDKCGDIIPPSLL 295
C ICF A C H++C C E Y V +G L L CP C I+ ++
Sbjct: 62 CGICFEGCAANAMSCAGCSHFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMI 121
Query: 296 KRMLGDKDFERWERLTLQKTLDSMSDVAYCP----RCVTACLEDEENNAQCSKCFFSFCT 351
+ D+D ++ R L + + + +CP C L D + C KC FSFC
Sbjct: 122 NSLTKDEDKVKYARFVLWSYIGVNNKIKWCPAPDCTCAVEFLGDGNYDVSC-KCKFSFCW 180
Query: 352 RCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCP 411
C H C + + +L +N E ++ +L S CP
Sbjct: 181 NCAEEAHRPVSCDTVSKWIL----KNSA----------------ESENMNWILAYSKPCP 220
Query: 412 HCGTAISRVSGCDHMLCS-NCRQPFCYSC 439
C I + GC HM C+ C+ FC+ C
Sbjct: 221 KCKRPIEKNQGCMHMTCTPPCKFEFCWLC 249
>Os09g0419500 Zinc finger, RING-type domain containing protein
Length = 317
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 92/232 (39%), Gaps = 34/232 (14%)
Query: 237 CMICFTERAGIDFIKLP-CGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKC----GDIIP 291
C IC I+ +P C H FC C+ Y V E VL + CP+ C G +
Sbjct: 105 CTICMETVDAIERFAIPGCTHAFCASCVRQYIAAKVEE-NVLSIGCPDPGCKDSGGGALH 163
Query: 292 PSLLKRMLGDKDFERWERLTLQKTLDSMSDVAYCPRCVTACL--------EDEENNAQCS 343
P + ++ + F+RW L S+ YCP + L E+ +A+C
Sbjct: 164 PEACRDVIPPQLFQRWGDALCDSALSSLK--FYCPFSDCSALLVDDPGDGEEAITDAECP 221
Query: 344 KCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEV 403
C FC +C+ H G C + ++L K R L +++ +
Sbjct: 222 HCSRMFCAQCKVPWHGGATCA-------------EFQKLGKDERGRDDLLLRKVAKDSKW 268
Query: 404 LRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPLHRGHSSAELIRR 455
R CP C + RV GC ++C C FCY C P+ R + + +R
Sbjct: 269 QR----CPKCKMYVERVEGCVFIIC-RCGHCFCYLCASPMSRDNHHCKKCKR 315
>Os09g0435200
Length = 887
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 85/219 (38%), Gaps = 39/219 (17%)
Query: 236 DCMICFTERAGID-FIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKC-------G 287
DC ICF +D F LPC H +C CM TY V EG V + CP+ +C
Sbjct: 439 DCGICFDTLPMLDLFRGLPCDHKYCLECMTTYIDGKVREGAV-PVACPDPECADGGDGGA 497
Query: 288 DIIPPSLLKRMLGDKDFERWERLTLQKTLDSMSDVAYCP--RC---VTACLEDEENNAQC 342
++ P K+ + F W L L + AYCP RC + E E A C
Sbjct: 498 GVLHPEGCKKAIDFAAFTDWG-LRLAEGAVPHDRRAYCPNRRCGILLETSGEAEPAMAAC 556
Query: 343 SKCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRI-NLANEISSIK 401
C C C GE S D R SKG A + LA+E
Sbjct: 557 PACQHLLCATCG-----GE---------WSTADDADHRDCSKGPEAAMVKKLADE----- 597
Query: 402 EVLRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSCG 440
R CP C + R +GC M C CR FCY CG
Sbjct: 598 ---RRWKACPKCRMLVERTAGCRVMSC-RCRMVFCYLCG 632
>Os08g0451800 Zinc finger, RING-type domain containing protein
Length = 315
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 254 CGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLGDKDFERWERLTLQ 313
C H FC C+ Y + E + + CP ++C + P L + +L + F+RW L
Sbjct: 131 CDHAFCAACLAGYVGAKIQE-RIADVRCPEERCRGALDPELCQGILPREVFDRWG-AALC 188
Query: 314 KTLDSMSDVAYCP--RCVTACLEDEE---NNAQCSKCFFSFCTRCRYLRHIGERCISPEE 368
+ + + AYCP C L+D ++C C FC +C H G C +
Sbjct: 189 EAMVLAAPRAYCPFKDCSAMMLDDAGEAVTESECPSCRRLFCAQCAVPWHAGVDCAA--- 245
Query: 369 KLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRVSGCDHMLC 428
++L KG+ + L E++ K+ R CP C + + GC H+ C
Sbjct: 246 ----------YKKLGKGDRGKEDLLVVEMAKGKKWKR----CPKCKYFVEKSQGCLHITC 291
Query: 429 SNCRQPFCYSCGKPLHRGHSS 449
C FCY CG H+S
Sbjct: 292 -RCGFEFCYGCGGQWGVTHAS 311
>Os03g0233500 UBA-like domain containing protein
Length = 612
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 30/220 (13%)
Query: 237 CMICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLK 296
C +C+ + D K+ CGH +C C Y + + EG ++ C KC I ++++
Sbjct: 137 CNVCYDDVPLSDASKMDCGHNYCNECWTGYFIVKINEGQSRRIKCMALKCNTICDEAIVR 196
Query: 297 RMLGDKD---FERWERLTLQKTLDSMSDVAYC---PRCVTA--CLEDEENNAQCSKCFFS 348
+++ K ER+ER L+ ++ V +C P C A D +C+ C
Sbjct: 197 KLVNAKRPDIAERFERFLLESYIEDNDTVKWCPSTPHCGNAIRVKGDIHCEVECT-CGRQ 255
Query: 349 FCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSV 408
FC C H C+ E + +D E ++ + ++
Sbjct: 256 FCFNCSSEAHSPCSCVMWELWIKKCRD--------------------ESETVNWITVNTK 295
Query: 409 LCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPLHRGHS 448
CP C + + GC+ + C C Q FC+ CG R H+
Sbjct: 296 PCPKCHKPVEKNGGCNLVACI-CGQAFCWLCGGATGRDHT 334
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,333,735
Number of extensions: 652866
Number of successful extensions: 2023
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1988
Number of HSP's successfully gapped: 15
Length of query: 461
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 357
Effective length of database: 11,605,545
Effective search space: 4143179565
Effective search space used: 4143179565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)