Os04g0593600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os04g0593600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.52 | 0.303 | 7.82 | 0.21 | 0.501 | 1.04 | -0.587 | 1.41 | -0.147 | 9.51 | 18.4 | 103 | -- | -- |
| 43.28 | 0.306 | 7.85 | -0.00881 | 0.516 | 1.13 | -0.494 | -- | -0.197 | 9.1 | 19 | 106 | -- | -- |
| 42.65 | 0.304 | 7.83 | 0.14 | 0.517 | 1.05 | -- | 1.13 | -0.159 | 9.42 | 18.49 | 113 | -- | -- |
| 43.84 | 0.308 | 7.85 | -0.0414 | 0.496 | 1.1 | -- | -- | -0.212 | 9.32 | 19 | 110 | -- | -- |
| 52.79 | 0.34 | 7.86 | 0.0634 | -- | 1.23 | -- | 0.852 | -0.206 | -- | 18.49 | 113 | -- | -- |
| 61.55 | 0.368 | 7.81 | 0.2 | 0.648 | -- | -0.101 | -- | -0.0344 | 11.9 | -- | -- | -- | -- |
| 61.59 | 0.368 | 7.81 | 0.196 | 0.649 | -- | -- | -- | -0.0347 | 11.9 | -- | -- | -- | -- |
| 53.55 | 0.342 | 7.87 | -0.0728 | -- | 1.26 | -- | -- | -0.245 | -- | 18.9 | 11 | -- | -- |
| 43.88 | 0.309 | 7.85 | -- | 0.507 | 1.08 | -- | -- | -0.209 | 9.41 | 19.09 | 111 | -- | -- |
| 88.09 | 0.439 | 7.83 | 0.176 | -- | -- | -- | -- | -0.0433 | -- | -- | -- | -- | -- |
| 62.61 | 0.37 | 7.82 | -- | 0.646 | -- | -- | -- | -0.0565 | 11.9 | -- | -- | -- | -- |
| 53.66 | 0.341 | 7.87 | -- | -- | 1.24 | -- | -- | -0.235 | -- | 18.8 | 3 | -- | -- |
| 88.91 | 0.44 | 7.83 | -- | -- | -- | -- | -- | -0.0629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 2 | 40.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 22 | 41.73 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 58 | 42.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 72 | 42.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 98 | 42.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 100 | 43.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 104 | 43.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 108 | 43.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 119 | 43.30 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 120 | 43.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 121 | 43.31 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 123 | 43.31 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 141 | 43.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 146 | 43.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 148 | 43.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 149 | 43.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 165 | 43.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 178 | 43.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 190 | 43.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 218 | 43.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 233 | 44.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 251 | 44.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 283 | 44.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 321 | 44.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 361 | 44.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 414 | 44.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 494 | 45.10 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 541 | 45.31 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 554 | 45.35 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 557 | 45.35 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 22 |
| 568 | 45.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 588 | 45.42 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 714 | 45.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 717 | 45.87 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 721 | 45.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 749 | 45.94 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 754 | 45.96 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 764 | 45.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 773 | 46.00 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 814 | 46.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 853 | 46.16 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 884 | 46.23 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 888 | 46.24 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 931 | 46.32 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 23 |
| 939 | 46.33 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 940 | 46.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |