BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0593600 Os04g0593600|AK058695
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0593600 Zinc finger, FYVE/PHD-type domain containing p... 382 e-107
Os04g0593800 Nucleic acid-binding, OB-fold domain containin... 168 3e-42
Os04g0594000 RWD domain containing protein 130 6e-31
Os04g0593700 RWD domain containing protein 85 5e-17
>Os04g0593600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 211
Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/211 (88%), Positives = 187/211 (88%)
Query: 1 TACLEDGDNEAVXXXXXXXXXXXXRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHKF 60
TACLEDGDNEAV RDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHKF
Sbjct: 1 TACLEDGDNEAVCSSCLFSFCTLCRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHKF 60
Query: 61 LEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHFRGSC 120
LEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHFRGSC
Sbjct: 61 LEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHFRGSC 120
Query: 121 KLFPQEELDRWNMQMNPXXXXXXXXXXXXEMFRQFAHPCPTCRQPCPKMGNNNHVFCWAC 180
KLFPQEELDRWNMQMNP EMFRQFAHPCPTCRQPCPKMGNNNHVFCWAC
Sbjct: 121 KLFPQEELDRWNMQMNPRVQRQNVAQVQAEMFRQFAHPCPTCRQPCPKMGNNNHVFCWAC 180
Query: 181 QKHFCALCRKTVHKTSQHFGPKGCKQHTADP 211
QKHFCALCRKTVHKTSQHFGPKGCKQHTADP
Sbjct: 181 QKHFCALCRKTVHKTSQHFGPKGCKQHTADP 211
>Os04g0593800 Nucleic acid-binding, OB-fold domain containing protein
Length = 305
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 122/216 (56%), Gaps = 13/216 (6%)
Query: 1 TACLEDGDNEAVXXXXXXXXXXXXRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGD---- 56
ACLED +N A RDRRH+G+KCM+ EEKL L+ R L D
Sbjct: 82 AACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEEKLNSLQDRTVVPFLSKDSFAS 141
Query: 57 QHKFLEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHF 116
+ E+ SIK +++ S CP C AI ++ GCN M CSNC Q FCY C A E + H
Sbjct: 142 KMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLCSNCRQSFCYGCGKA-ENHGHS 200
Query: 117 RGSCKLFPQEELDRWNMQMNPXXXXXXXXXXXX-EMFRQFAHPCPTCRQPCPKMGNNNHV 175
C+ QE L + NP E+ RQ HPCP CRQP PKMGNN+H+
Sbjct: 201 SEPCRY--QENLA---TKKNPTVLIEEVKKELEGELSRQ--HPCPNCRQPNPKMGNNSHM 253
Query: 176 FCWACQKHFCALCRKTVHKTSQHFGPKGCKQHTADP 211
FCWACQ H+CA C + V K+S+H+GP+GCKQH+ DP
Sbjct: 254 FCWACQVHYCAQCHRMVRKSSEHYGPRGCKQHSVDP 289
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 22/210 (10%)
Query: 1 TACLEDGDNEAVXXXXXXXXXXXXRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHKF 60
CLED DN A ++ H +C++PEEKL ++RQ +G++ + +
Sbjct: 293 IGCLEDEDNNAQCPKCSFFFCSFCKEPCHPRRQCLTPEEKL---QRRQASGRMS--EREV 347
Query: 61 LEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHFRGSC 120
+E+ +IKA+ D ++CP+C+MAI K GCNKM C NCGQ+FC++C AI+GY+HF C
Sbjct: 348 AQEILNIKALYNDVRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHF-SEC 406
Query: 121 KLFPQEELDRWNMQMNPXXXXXXXXXXXXEMFRQFAHP------CPTCRQPCPKMGNNNH 174
KLF ++ W QM R P CP CR+ K + +
Sbjct: 407 KLFAPRDISAWERQME---------EQYGNHVRLSLRPVGGTIRCPKCRERNFK-DDEKY 456
Query: 175 VFCWACQKHFCALCRKTVHKTSQHFGPKGC 204
+FCWAC+ ++C +CR+ V HFG C
Sbjct: 457 IFCWACRANYCTMCRREVQDKRGHFGSPEC 486
>Os04g0593700 RWD domain containing protein
Length = 461
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 1 TACLEDGDNEAVXXXXXXXXXXXXRDRRHVGDKCMSPEEKLLILEKRQEAGKLQ----GD 56
TACLED +N A R RH+G++C+SPEEKLL L+ R + +L
Sbjct: 330 TACLEDEENNAQCSKCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFAR 389
Query: 57 QHKFLEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQC 106
+ E+ SIK +++ S +CP C AI ++ GC+ M CSNC Q FCY C
Sbjct: 390 RINLANEISSIKEVLRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSC 439
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,168,083
Number of extensions: 262496
Number of successful extensions: 1110
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 4
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)