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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0593800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0334) R2 : 0.131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.66 (0.584) R2dE : 0.121 R2E : 0.118
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.13 (0.0703) R2dN8 : 0.0126 R2N8 : 0.00903
σ : 0.627
deviance : 181.2
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.6997
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.93
open length of G : 4.07

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.78 0.612 3.11 -0.531 0.303 3.86 -0.338 2.27 0.129 17.6 0.9568 10 8.8 5.97
170.45 0.608 3.11 -0.527 0.309 4.19 -0.364 -- 0.133 17.7 1.039 11 9.28 6.07
169.24 0.606 3.14 -0.525 0.328 3.86 -- 4.64 0.0698 17.3 0.699 12 9.88 4.89
168.99 0.605 3.11 -0.519 0.304 4.53 -- -- 0.119 17.3 0.735 12 9.91 5.03
173.63 0.614 3.11 -0.51 -- 3.65 -- 4.01 0.101 -- 0.7179 12 9.88 4.96
193.82 0.653 3.12 -0.498 0.33 -- -0.00687 -- 0.107 16.8 -- -- -- --
193.82 0.652 3.12 -0.498 0.33 -- -- -- 0.107 16.7 -- -- -- --
173.67 0.614 3.11 -0.537 -- 4.74 -- -- 0.117 -- 0.7497 12 9.9 4.94
176.17 0.618 3.11 -- 0.297 4.49 -- -- 0.131 17.1 0.7008 12 9.92 4.85
199.6 0.66 3.12 -0.51 -- -- -- -- 0.0984 -- -- -- -- --
200.35 0.662 3.11 -- 0.339 -- -- -- 0.162 16.7 -- -- -- --
181.2 0.627 3.11 -- -- 4.66 -- -- 0.13 -- 0.6997 12 9.93 4.07
206.46 0.671 3.1 -- -- -- -- -- 0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.80 wind 1.0 10 < th dose dependent rect. 9 6
21 170.45 wind 1.0 10 < th dose dependent rect. 11 3
25 170.53 wind 1.0 10 < th dose independent rect. 11 4
30 170.85 wind 1.0 90 < th dose independent rect. 12 1
46 170.99 wind 1.0 90 < th dose independent rect. 11 5
51 171.04 wind 1.0 90 < th dose dependent rect. 12 2
52 171.05 wind 1.0 90 < th dose dependent rect. 12 4
102 171.46 wind 1.0 10 < th dose dependent rect. 13 1
106 171.48 wind 1.0 10 < th dose independent rect. 14 4
111 171.48 wind 1.0 10 < th dose dependent rect. 14 4
304 174.21 wind 1.0 10 < th dose independent sin 20 NA
328 175.48 wind 1.0 10 > th dose independent sin 21 NA
365 177.35 wind 1.0 10 < th dose dependent sin 21 NA
519 182.80 atmosphere 1005.0 10 > th dose dependent rect. 1 2
541 183.15 wind 1.0 10 < th dose independent rect. 9 18
553 183.31 wind 1.0 10 < th dose independent rect. 6 21
577 183.98 humidity 80.0 270 > th dose independent rect. 11 1
599 184.32 atmosphere 1005.0 30 > th dose independent rect. 1 2
635 185.18 humidity 50.0 270 > th dose dependent rect. 19 14
645 185.29 radiation 30.0 10 > th dose independent rect. 13 1
646 185.29 temperature 30.0 90 > th dose dependent rect. 17 22
667 185.63 temperature 30.0 90 > th dose dependent rect. 12 1
671 185.70 humidity 90.0 90 < th dose independent rect. 1 2
678 185.77 wind 1.0 30 < th dose dependent rect. 9 18
692 185.89 temperature 30.0 30 < th dose independent rect. 3 23
713 186.11 temperature 30.0 90 < th dose independent rect. 6 18
721 186.15 atmosphere 1000.0 90 > th dose dependent rect. 24 6
724 186.19 temperature 25.0 30 < th dose dependent rect. 2 1
738 186.31 wind 1.0 90 < th dose independent rect. 3 13
749 186.41 wind 1.0 10 > th dose independent rect. 6 19
761 186.50 temperature 15.0 30 > th dose independent rect. 3 23
769 186.53 wind 1.0 10 > th dose independent rect. 7 17
773 186.55 atmosphere 1005.0 720 > th dose independent rect. 2 1
778 186.57 atmosphere 995.0 90 > th dose dependent rect. 1 14
800 186.67 atmosphere 1000.0 10 > th dose dependent rect. 1 5
804 186.68 atmosphere 1005.0 90 > th dose independent rect. 24 6
810 186.69 wind 1.0 90 > th dose independent rect. 6 11
815 186.70 precipitation 0.1 10 < th dose independent rect. 3 23
816 186.70 precipitation 0.1 10 < th dose dependent rect. 3 23
832 186.77 temperature 25.0 10 < th dose independent rect. 2 1
834 186.78 atmosphere 1005.0 10 > th dose independent rect. 1 5
836 186.79 wind 1.0 30 > th dose independent rect. 2 1
840 186.80 atmosphere 1005.0 90 > th dose independent rect. 24 15
846 186.82 wind 3.0 10 < th dose independent rect. 2 1
847 186.82 wind 9.0 10 < th dose independent rect. 2 1
848 186.82 temperature 10.0 10 > th dose independent rect. 2 1
851 186.82 humidity 50.0 10 > th dose independent rect. 2 1
855 186.82 atmosphere 1010.0 10 < th dose independent rect. 2 1
857 186.82 radiation 1.0 10 < th dose independent rect. 2 1
862 186.82 precipitation 0.1 10 < th dose independent rect. 2 1
864 186.82 atmosphere 1000.0 10 > th dose independent rect. 3 23
865 186.82 radiation 1.0 10 < th dose dependent rect. 2 1
870 186.82 precipitation 0.1 10 < th dose dependent rect. 2 1
879 186.85 atmosphere 995.0 10 > th dose dependent rect. 1 14
900 186.89 wind 1.0 30 < th dose dependent rect. 11 16
927 186.92 temperature 10.0 30 > th dose dependent rect. 2 1
934 186.93 humidity 50.0 30 > th dose dependent rect. 2 1
938 186.94 wind 7.0 30 < th dose dependent rect. 2 1
954 186.98 atmosphere 1015.0 30 < th dose dependent rect. 2 1
976 187.05 wind 1.0 30 < th dose dependent rect. 13 14