BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0593800 Os04g0593800|AK102739
(305 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0593800 Nucleic acid-binding, OB-fold domain containin... 633 0.0
Os04g0593700 RWD domain containing protein 332 3e-91
Os04g0594000 RWD domain containing protein 218 6e-57
Os04g0593600 Zinc finger, FYVE/PHD-type domain containing p... 199 3e-51
Os08g0540300 Zinc finger, RING-type domain containing protein 78 1e-14
Os09g0513800 Similar to ARIADNE-like protein 76 4e-14
Os02g0694700 RWD domain containing protein 72 5e-13
Os08g0451800 Zinc finger, RING-type domain containing protein 72 6e-13
AK110331 71 8e-13
Os09g0419500 Zinc finger, RING-type domain containing protein 70 2e-12
>Os04g0593800 Nucleic acid-binding, OB-fold domain containing protein
Length = 305
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE
Sbjct: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
Query: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE
Sbjct: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
Query: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC
Sbjct: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
Query: 181 SNCRQSFCYGCGKAENHGHSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNC 240
SNCRQSFCYGCGKAENHGHSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNC
Sbjct: 181 SNCRQSFCYGCGKAENHGHSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNC 240
Query: 241 RQPNPKMGNNSHMFCWACQVHYCAQCHRMVRKSSEHYGPRGCKQHSVDPEIPLRFKANKN 300
RQPNPKMGNNSHMFCWACQVHYCAQCHRMVRKSSEHYGPRGCKQHSVDPEIPLRFKANKN
Sbjct: 241 RQPNPKMGNNSHMFCWACQVHYCAQCHRMVRKSSEHYGPRGCKQHSVDPEIPLRFKANKN 300
Query: 301 DDSGS 305
DDSGS
Sbjct: 301 DDSGS 305
>Os04g0593700 RWD domain containing protein
Length = 461
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 160/201 (79%), Positives = 173/201 (86%)
Query: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
F+ GHYFC+RCMETYSRMHV EGTVLKLLCPNDKCG IIPPSLLKR+LGD DFERWE
Sbjct: 249 FIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCPNDKCGDIIPPSLLKRMLGDKDFERWE 308
Query: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
RL LQKTLDSMSD+AYCPRC ACLEDEENNAQC KCFFSFC RCR RHIGE+C++ EE
Sbjct: 309 RLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQCSKCFFSFCTRCRYLRHIGERCISPEE 368
Query: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
KL SLQDR V LSK +FA ++NL+NEISSIKEVLRSSV CPHCGTAISRVSGC+HMLC
Sbjct: 369 KLLSLQDRNKVRQLSKGNFARRINLANEISSIKEVLRSSVLCPHCGTAISRVSGCDHMLC 428
Query: 181 SNCRQSFCYGCGKAENHGHSS 201
SNCRQ FCY CGK + GHSS
Sbjct: 429 SNCRQPFCYSCGKPLHRGHSS 449
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 162/286 (56%), Gaps = 15/286 (5%)
Query: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
F+ H FC +C+ T RMHV EG+V +L+CP+ KC IPP +LKRLL + +FERW+
Sbjct: 212 FIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCPDTKCNASIPPYVLKRLLTEDEFERWD 271
Query: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
RL L+K LDSMSD+ YCPRC CLEDE+NNAQCPKC F FC+ C++ H +C+T EE
Sbjct: 272 RLTLEKALDSMSDVVYCPRCVIGCLEDEDNNAQCPKCSFFFCSFCKEPCHPRRQCLTPEE 331
Query: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
KL Q S+ ++ EI +IK + CP C AIS+ +GCN M+C
Sbjct: 332 KLQRRQ---------ASGRMSEREVAQEILNIKALYNDVRLCPKCRMAISKTAGCNKMVC 382
Query: 181 SNCRQSFCYGCGKA-ENHGHSSEPCRYQENLATKKNPTVLIEEVKKELEGEL---SRQHP 236
NC Q FC+ CGKA + + H SE C+ + E+ + L
Sbjct: 383 GNCGQFFCFRCGKAIKGYDHFSE-CKLFAPRDISAWERQMEEQYGNHVRLSLRPVGGTIR 441
Query: 237 CPNCRQPNPKMGNNSHMFCWACQVHYCAQCHRMVRKSSEHYGPRGC 282
CP CR+ N K + ++FCWAC+ +YC C R V+ H+G C
Sbjct: 442 CPKCRERNFK-DDEKYIFCWACRANYCTMCRREVQDKRGHFGSPEC 486
>Os04g0593600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 211
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 135/216 (62%), Gaps = 13/216 (6%)
Query: 82 AACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEEKLNSLQDRTVVPFLSKDSFAS 141
ACLED +N A C C FSFC CRDRRH+G+KCM+ EEKL L+ R L D
Sbjct: 1 TACLEDGDNEAVCSSCLFSFCTLCRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGD---- 56
Query: 142 KMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLCSNCRQSFCYGCGKA-ENHGHS 200
+ E+ SIK +++ S CP C AI ++ GCN M CSNC Q FCY C A E + H
Sbjct: 57 QHKFLEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHF 116
Query: 201 SEPCRY--QENLA---TKKNPTVLIEEVKKELEGELSRQ--HPCPNCRQPNPKMGNNSHM 253
C+ QE L + NP V + V +++ E+ RQ HPCP CRQP PKMGNN+H+
Sbjct: 117 RGSCKLFPQEELDRWNMQMNPRVQRQNVA-QVQAEMFRQFAHPCPTCRQPCPKMGNNNHV 175
Query: 254 FCWACQVHYCAQCHRMVRKSSEHYGPRGCKQHSVDP 289
FCWACQ H+CA C + V K+S+H+GP+GCKQH+ DP
Sbjct: 176 FCWACQKHFCALCRKTVHKTSQHFGPKGCKQHTADP 211
>Os08g0540300 Zinc finger, RING-type domain containing protein
Length = 607
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 8 HYFCRRCMETYSRMHVTEG-TVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWERLILQK 66
H++C C E Y +++G L L CP+ CG ++ +++ +L D D R+ R IL+
Sbjct: 174 HFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVLQNMINKLAKDDDKVRYARFILRA 233
Query: 67 TLDSMSDLAYCP----RCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEEKL 122
++ +CP C + D + C C FSFC C + H C T+ +
Sbjct: 234 YVEDSKKTKWCPAPDCTCAVEFVSDGNYDVSC-NCKFSFCWNCTEEAHRPVNCETVSRWI 292
Query: 123 NSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLCS- 181
+ S E ++ +L +S CP C I + GC HM C+
Sbjct: 293 --------------------LKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTP 332
Query: 182 NCRQSFCYGC-GKAENHGH 199
C+ FC+ C G HG
Sbjct: 333 PCKFEFCWLCLGSWAEHGE 351
>Os09g0513800 Similar to ARIADNE-like protein
Length = 516
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 28/201 (13%)
Query: 8 HYFCRRCMETYSRMHVTEG-TVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWERLILQK 66
H++C C E Y V +G L L CP C I+ ++ L D D ++ R +L
Sbjct: 81 HFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMINSLTKDEDKVKYARFVLWS 140
Query: 67 TLDSMSDLAYCP----RCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEEKL 122
+ + + +CP C L D + C KC FSFC C + H C T+ + +
Sbjct: 141 YIGVNNKIKWCPAPDCTCAVEFLGDGNYDVSC-KCKFSFCWNCAEEAHRPVSCDTVSKWI 199
Query: 123 NSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLCS- 181
+ S E ++ +L S CP C I + GC HM C+
Sbjct: 200 --------------------LKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTP 239
Query: 182 NCRQSFCYGC-GKAENHGHSS 201
C+ FC+ C G +HG +
Sbjct: 240 PCKFEFCWLCLGAWSDHGDGT 260
>Os02g0694700 RWD domain containing protein
Length = 415
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
F+ H FC +CMET R+HV EG+V +L CP+ C +PP+LL+ LLGD ++ RWE
Sbjct: 263 FIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPDTSCRRPLPPALLRGLLGDGEYARWE 322
Query: 61 RLILQ 65
L+L+
Sbjct: 323 SLVLR 327
>Os08g0451800 Zinc finger, RING-type domain containing protein
Length = 315
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 8 HYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWERLILQKT 67
H FC C+ Y + E + + CP ++C G + P L + +L F+RW + +
Sbjct: 133 HAFCAACLAGYVGAKIQE-RIADVRCPEERCRGALDPELCQGILPREVFDRWGAALCEAM 191
Query: 68 LDSMSDLAYCP--RCGAACLEDEE---NNAQCPKCFFSFCARCRDRRHIGEKCMTIEEKL 122
+ + + AYCP C A L+D ++CP C FCA+C H G C ++
Sbjct: 192 VLA-APRAYCPFKDCSAMMLDDAGEAVTESECPSCRRLFCAQCAVPWHAGVDCAAYKK-- 248
Query: 123 NSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLCSN 182
L K + L E++ K+ RCP C + + GC H+ C
Sbjct: 249 -----------LGKGDRGKEDLLVVEMAKGKKW----KRCPKCKYFVEKSQGCLHITC-R 292
Query: 183 CRQSFCYGCGKAENHGHSS 201
C FCYGCG H+S
Sbjct: 293 CGFEFCYGCGGQWGVTHAS 311
>AK110331
Length = 674
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 7 GHYFCRRCMETYSRMHVTEGTV-----LKLLCPNDKCGGIIPPSLLKRLLGDTDFERWER 61
GH FC C + Y + V G L CP KC ++ + + L + F+++
Sbjct: 346 GHRFCIPCWKDYLKSSVDSGASAGGNCLSSTCPGFKCKELLGEQIYEMLCDEASFKKYRD 405
Query: 62 LILQKTLDSMSDLAYCPR--CGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIE 119
+ L +D + +CP CG + C FC +C+ H C
Sbjct: 406 VQLLSFVDDNESITWCPGKGCGNVIAFSKRKKTVYCTCGQRFCFKCKAEAHAPTTC---- 461
Query: 120 EKLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHML 179
+ +L++D NL ++ +L + CPHCG + + GC +M
Sbjct: 462 --------KEAADWLARDK--GSQNLDSKF-----LLEETKPCPHCGVRVKKDGGCMYMS 506
Query: 180 CSNCRQSFCYGCGKAENH 197
C+ C++++C+ CGK+++H
Sbjct: 507 CTQCKKAWCWQCGKSDHH 524
>Os09g0419500 Zinc finger, RING-type domain containing protein
Length = 317
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKC----GGIIPPSLLKRLLGDTDF 56
F P H FC C+ Y V E VL + CP+ C GG + P + ++ F
Sbjct: 118 FAIPGCTHAFCASCVRQYIAAKVEE-NVLSIGCPDPGCKDSGGGALHPEACRDVIPPQLF 176
Query: 57 ERWERLILQKTLDSMSDLAYCP--RCGAACLEDEEN------NAQCPKCFFSFCARCRDR 108
+RW + L S+ YCP C A ++D + +A+CP C FCA+C+
Sbjct: 177 QRWGDALCDSALSSLK--FYCPFSDCSALLVDDPGDGEEAITDAECPHCSRMFCAQCKVP 234
Query: 109 RHIGEKCMTIEE--KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCG 166
H G C ++ K +D ++ ++KDS RCP C
Sbjct: 235 WHGGATCAEFQKLGKDERGRDDLLLRKVAKDS-------------------KWQRCPKCK 275
Query: 167 TAISRVSGCNHMLCSNCRQSFCYGCG 192
+ RV GC ++C C FCY C
Sbjct: 276 MYVERVEGCVFIIC-RCGHCFCYLCA 300
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,592,184
Number of extensions: 477839
Number of successful extensions: 1514
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1487
Number of HSP's successfully gapped: 14
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)