BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0593600 Os04g0593600|AK058695
         (211 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32340.1  | chr1:11663462-11666037 REVERSE LENGTH=689          210   5e-55

>AT1G32340.1 | chr1:11663462-11666037 REVERSE LENGTH=689
          Length = 688

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 135/216 (62%), Gaps = 8/216 (3%)

Query: 1   TACLEDGDNEAVXXXXXXXXXXXXRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHK- 59
           T C+ED +  A+            +++RHVG  CMSPE +L IL++RQ++ +L  +Q + 
Sbjct: 471 TPCIEDEEQLALCFKCYFSFCTLCKEKRHVGVACMSPELRLQILQERQDSSRLGEEQRRK 530

Query: 60  ---FLEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHF 116
               + E+ S+K IMK +K CP CK+AI +  GCNKM C+NCGQYFCY+CN AI GYEHF
Sbjct: 531 EKEMINEIMSVKVIMKSAKQCPSCKIAISRTGGCNKMVCNNCGQYFCYRCNEAITGYEHF 590

Query: 117 -RGSCKLFPQEELDRWNMQMNPXXXXXXXXXXXXEMFRQF---AHPCPTCRQPCPKMGNN 172
             G C+LFPQE +  WN  MN                 QF      CP CRQ   K GNN
Sbjct: 591 SEGKCELFPQEAIQEWNEMMNERQVIGQIQAQLFAQGGQFPQRGQLCPNCRQFNGKAGNN 650

Query: 173 NHVFCWACQKHFCALCRKTVHKTSQHFGPKGCKQHT 208
           NH+FCWACQ HFC LC+K V K++QH+GPKGCKQHT
Sbjct: 651 NHLFCWACQAHFCYLCKKVVKKSAQHYGPKGCKQHT 686



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,610,485
Number of extensions: 174501
Number of successful extensions: 946
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 8
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)